Detailed information of deep learning profile BP001110.1

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This page shows detailed deep learning-derived predictions and motifs for SP1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SP1
Model ID: BP001110.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0079.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P08047  
Source: ENCSR460YAM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.01 0.00 -0.00 -0.00 0.00 0.00 0.00 0.03 0.00 0.00 -0.00 0.00 0.01 0.00 -0.00 0.00 0.00 ]
G [ -0.00 -0.00 0.00 0.00 0.01 0.03 0.03 0.00 0.03 0.01 0.01 0.00 -0.00 -0.00 0.00 0.00 0.02 0.03 0.03 0.00 0.04 0.02 0.01 0.00 -0.00 0.00 0.00 -0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 24 21 20 16 20 19 21 19 13 18 24 15 20 34 40 19 23 0 0 10 0 0 17 18 32 38 48 17 17 0 0 5 0 0 23 18 13 14 30 19 23 26 20 15 19 18 18 25 25 20 ]
C [ 43 52 42 40 37 35 41 46 53 40 38 45 50 35 23 1 0 1 0 128 0 2 1 21 88 52 7 2 1 0 0 127 0 0 1 14 110 68 36 39 32 41 42 37 40 39 35 44 46 39 ]
G [ 60 58 63 64 61 68 61 54 63 70 60 64 49 54 69 90 115 138 139 0 139 129 116 90 8 21 77 103 121 139 139 0 139 127 108 102 2 31 38 71 75 62 61 67 60 60 63 46 48 59 ]
T [ 12 8 14 19 21 17 16 20 10 11 17 15 20 16 7 29 1 0 0 1 0 8 5 10 11 28 7 17 0 0 0 7 0 12 7 5 14 26 35 10 9 10 16 20 20 22 23 24 20 21 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 0.00 0.01 -0.02 -0.01 -0.01 -0.01 -0.02 0.01 0.00 0.00 0.01 0.01 0.00 0.01 -0.02 -0.01 -0.01 -0.02 -0.02 0.01 0.00 -0.00 -0.00 0.00 0.00 0.00 ]
C [ 0.00 0.00 0.00 -0.01 -0.02 -0.01 -0.01 0.03 -0.01 -0.00 -0.00 0.01 0.02 0.01 0.00 -0.01 -0.02 -0.00 -0.01 0.03 -0.01 -0.01 -0.01 0.01 0.02 0.01 -0.00 0.00 0.00 ]
G [ -0.00 -0.00 0.01 0.01 0.02 0.03 0.03 -0.01 0.03 0.01 0.01 0.01 -0.01 0.00 0.01 0.01 0.02 0.03 0.03 -0.01 0.04 0.02 0.01 0.01 -0.01 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.01 0.01 -0.01 -0.02 -0.02 -0.01 -0.02 0.01 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.02 -0.02 -0.02 -0.01 -0.02 0.01 0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 5373

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 666

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 225

CWM

PFM

     

HCWM

7 profiles found for the same TF (SP1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001106.1 SP1 ENCSR000BHK GM12878 Homo sapiens MA0079.5
BP001107.1 SP1 ENCSR000BIR H1 Homo sapiens MA0079.5
BP001108.1 SP1 ENCSR000BKO K562 Homo sapiens MA0079.5
BP001109.1 SP1 ENCSR372IML K562 Homo sapiens MA0079.5
BP001111.1 SP1 ENCSR583CGO WTC11 Homo sapiens MA0079.5
BP001112.1 SP1 ENCSR729LGA MCF-7 Homo sapiens MA0079.5
BP001113.1 SP1 ENCSR991ELG K562 Homo sapiens MA0079.5
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