JASPAR - SP1 - BP001106.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for SP1 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	SP1
Model ID:	BP001106.1
Cell line/tissue:	GM12878
Class:	C2H2 zinc finger factors
Family:	Three-zinc finger Kruppel-related
JASPAR ID:	MA0079.5
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P08047
Source:	ENCSR000BHK
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_1

Number of seqlets: 2068

Contribution weight matrix (CWM)

A [	0.00	0.00	-0.00	-0.00	0.00	0.00	-0.00	0.00	0.00	0.00	0.00	-0.00	-0.00	]
C [	0.00	0.00	0.00	0.00	0.00	0.00	0.02	0.00	0.00	0.00	0.00	0.01	0.00	]
G [	0.00	0.01	0.01	0.01	0.02	0.02	0.00	0.03	0.01	0.01	0.01	0.00	0.00	]
T [	-0.00	-0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	]

Frequency matrix

A [	385	371	382	375	368	345	315	343	370	346	308	320	259	364	792	424	154	152	20	33	33	8	17	361	379	141	156	475	376	408	353	278	293	349	302	344	377	359	342	358	381	368	385	385	386	363	385	374	408	367	]
C [	598	578	588	623	660	607	607	582	580	767	736	612	588	560	396	231	49	25	25	23	1948	3	33	51	123	1638	1039	270	539	477	520	584	596	517	565	598	624	598	595	608	615	652	622	611	610	582	546	571	594	656	]
G [	729	747	760	721	736	794	807	790	823	718	794	890	890	818	548	1274	1474	1798	1992	2003	38	2051	1799	1568	1477	119	333	599	872	920	910	910	874	879	912	801	751	773	769	743	744	733	699	715	685	732	743	751	707	716	]
T [	356	372	338	349	304	322	339	353	295	237	230	246	331	326	332	139	391	93	31	9	49	6	219	88	89	170	540	724	281	263	285	296	305	323	289	325	316	338	362	359	328	315	362	357	387	391	394	372	359	329	]

Hypothetical CWM

A [	-0.00	0.00	0.00	-0.00	-0.00	-0.01	-0.01	-0.01	-0.01	-0.01	0.00	0.00	-0.00	-0.00	0.00	-0.00	]
C [	0.00	0.00	0.00	0.00	-0.00	-0.00	-0.00	0.02	-0.00	0.00	0.00	0.00	0.01	0.01	0.00	0.00	]
G [	0.00	0.00	0.01	0.01	0.01	0.02	0.02	0.00	0.03	0.01	0.01	0.01	-0.00	0.00	0.01	0.00	]
T [	0.00	-0.00	-0.00	0.00	-0.00	-0.01	-0.01	-0.01	-0.01	0.00	-0.00	-0.00	-0.00	0.00	0.00	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 4678

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1039

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 839

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 273

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 209

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 103

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 50

CWM

PFM

HCWM

7 profiles found for the same TF (SP1) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001107.1	SP1	ENCSR000BIR	H1	Homo sapiens	MA0079.5
BP001108.1	SP1	ENCSR000BKO	K562	Homo sapiens	MA0079.5
BP001109.1	SP1	ENCSR372IML	K562	Homo sapiens	MA0079.5
BP001110.1	SP1	ENCSR460YAM	HepG2	Homo sapiens	MA0079.5
BP001111.1	SP1	ENCSR583CGO	WTC11	Homo sapiens	MA0079.5
BP001112.1	SP1	ENCSR729LGA	MCF-7	Homo sapiens	MA0079.5
BP001113.1	SP1	ENCSR991ELG	K562	Homo sapiens	MA0079.5