Detailed information of deep learning profile BP001084.1

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This page shows detailed deep learning-derived predictions and motifs for E2F1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: E2F1
Model ID: BP001084.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: E2F
JASPAR ID: MA0024.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q01094  
Source: ENCSR717ZZW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.01 0.00 0.00 0.00 ]
C [ 0.00 0.00 0.00 0.00 0.01 0.00 0.03 0.00 0.01 0.00 0.00 -0.00 0.00 -0.00 ]
G [ -0.00 0.00 0.00 0.01 0.00 0.03 0.00 0.03 0.00 0.01 0.00 0.00 -0.00 -0.00 ]
T [ 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 245 242 251 236 244 257 250 292 290 304 340 363 433 292 431 136 27 0 0 0 12 62 1039 825 559 372 292 279 348 375 309 264 256 247 270 272 282 257 280 224 247 263 255 244 242 210 267 242 239 237 ]
C [ 460 463 456 445 470 465 481 447 425 425 409 422 385 401 368 199 1112 35 1429 11 713 400 191 130 241 351 327 446 396 345 385 456 479 478 455 414 429 448 439 475 421 455 433 463 455 471 485 459 478 436 ]
G [ 463 465 488 516 459 453 445 385 397 425 445 397 338 407 309 826 291 1394 1 1420 702 902 102 232 296 305 388 410 408 447 492 413 436 466 474 497 491 473 482 482 503 484 494 470 478 484 448 497 480 500 ]
T [ 263 261 236 234 258 256 255 307 319 277 237 249 275 331 323 270 1 2 1 0 4 67 99 244 335 403 424 296 279 264 245 298 260 240 232 248 229 253 230 250 260 229 249 254 256 266 231 233 234 258 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.01 -0.01 -0.03 -0.03 -0.03 -0.02 -0.02 0.01 0.01 0.00 0.00 ]
C [ 0.00 -0.00 0.00 -0.00 0.02 0.00 0.03 -0.00 0.02 0.00 0.00 -0.00 -0.00 -0.00 ]
G [ -0.00 0.00 -0.00 0.01 0.01 0.03 -0.00 0.03 0.01 0.01 -0.01 -0.00 -0.00 -0.00 ]
T [ -0.00 -0.00 -0.01 -0.00 -0.03 -0.03 -0.03 -0.02 -0.02 -0.01 -0.01 -0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2331

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 132

CWM

PFM

     

HCWM

6 profiles found for the same TF (E2F1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001079.1 E2F1 ENCSR000EVJ HeLa-S3 Homo sapiens UN0490.2
BP001080.1 E2F1 ENCSR000EVM HeLa-S3 Homo sapiens UN0490.2
BP001081.1 E2F1 ENCSR000EWX MCF-7 Homo sapiens UN0490.2
BP001082.1 E2F1 ENCSR153DWR K562 Homo sapiens MA0024.3
BP001083.1 E2F1 ENCSR563LLO K562 Homo sapiens MA0024.3
BP001085.1 E2F1 ENCSR836SPL WTC11 Homo sapiens UN0490.2
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