Detailed information of deep learning profile BP000989.1

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This page shows detailed deep learning-derived predictions and motifs for NR2C2 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR2C2
Model ID: BP000989.1
Cell line/tissue: K562
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA0504.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49116  
Source: ENCSR750LYM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.03 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.03 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.03 0.04 0.00 0.00 0.00 -0.00 -0.00 0.03 0.03 0.01 0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.03 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.03 0.01 0.04 -0.00 -0.00 -0.00 -0.00 0.01 0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1129 1117 1142 1154 1129 1103 1118 1124 1192 1107 1074 1089 1153 1110 1188 1192 955 859 256 760 3345 796 100 33 302 23 675 3824 870 187 86 679 1076 1191 1045 1097 1051 1015 1016 1226 1106 1128 1073 1099 1136 1157 1106 1149 1122 1129 ]
C [ 1345 1303 1291 1382 1336 1378 1362 1372 1325 1310 1353 1375 1334 1378 1394 1542 1410 1428 720 594 1076 3931 4586 743 1484 290 524 688 3812 4341 1782 2005 1102 1214 1342 1348 1434 1401 1378 1341 1336 1336 1359 1370 1323 1273 1425 1343 1346 1361 ]
G [ 1152 1233 1183 1165 1103 1183 1128 1126 1160 1140 1148 1155 1092 1205 1106 1038 1032 1203 212 3320 306 34 30 45 223 27 3607 294 48 52 77 714 1055 1536 1357 1218 1099 1034 1090 1068 1149 1209 1101 1127 1118 1131 1147 1114 1194 1087 ]
T [ 1266 1239 1276 1191 1324 1228 1284 1270 1215 1335 1317 1273 1313 1199 1204 1120 1495 1402 3704 218 165 131 176 4071 2883 4552 86 86 162 312 2947 1494 1659 951 1148 1229 1308 1442 1408 1257 1301 1219 1359 1296 1315 1331 1214 1286 1230 1315 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 0.00 -0.02 0.01 0.03 0.02 -0.01 -0.03 -0.00 -0.03 0.01 0.04 0.01 -0.01 -0.03 -0.00 0.00 -0.00 0.00 ]
C [ 0.01 0.01 0.00 -0.00 0.01 -0.00 0.01 0.04 0.04 0.01 0.01 0.02 -0.00 0.00 0.04 0.04 0.02 0.01 0.00 0.01 0.00 ]
G [ 0.00 0.01 0.01 0.01 -0.01 0.03 -0.01 -0.03 -0.01 -0.01 -0.01 -0.02 0.04 -0.00 -0.03 -0.00 -0.01 0.00 0.00 0.01 0.01 ]
T [ -0.00 -0.00 0.00 0.00 0.03 -0.02 -0.03 -0.02 -0.01 0.03 0.02 0.05 -0.03 -0.03 -0.02 -0.01 0.02 0.00 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 11783

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 5285

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2642

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 783

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 739

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 452

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 445

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 220

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 200

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 187

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 173

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 139

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 106

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 71

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 69

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_18

Num. of seqlets: 63

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_20

Num. of seqlets: 46

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_22

Num. of seqlets: 34

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_25

Num. of seqlets: 24

CWM

PFM

     

HCWM

7 profiles found for the same TF (NR2C2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000982.1 NR2C2 ENCSR000EUL GM12878 Homo sapiens MA0504.2
BP000983.1 NR2C2 ENCSR000EVN HeLa-S3 Homo sapiens MA0504.2
BP000984.1 NR2C2 ENCSR000EVS HepG2 Homo sapiens MA0504.2
BP000985.1 NR2C2 ENCSR000EWH K562 Homo sapiens MA0504.2
BP000986.1 NR2C2 ENCSR454GVT WTC11 Homo sapiens MA0504.2
BP000987.1 NR2C2 ENCSR516SWI K562 Homo sapiens MA0504.2
BP000988.1 NR2C2 ENCSR559ZKI HepG2 Homo sapiens MA0504.2
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