Detailed information of deep learning profile BP000982.1

This page shows detailed deep learning-derived predictions and motifs for NR2C2 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR2C2
Model ID: BP000982.1
Cell line/tissue: GM12878
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA0504.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49116  
Source: ENCSR000EUL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ -0.00 0.00 0.00 0.01 -0.00 -0.00 0.00 -0.00 0.02 0.01 0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.02 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.02 -0.00 0.00 0.00 0.00 -0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.02 0.02 0.00 -0.00 0.00 0.00 -0.00 0.02 0.02 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 ]
T [ 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.03 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 0.00 ]

Frequency matrix

A [ 77 62 71 78 63 74 64 58 70 84 67 78 62 44 42 38 123 76 149 10 2 0 3 288 149 269 7 6 4 4 262 68 89 59 50 40 54 85 56 79 49 61 62 75 70 54 65 54 72 60 ]
C [ 76 72 79 67 69 82 61 68 95 66 78 57 50 78 84 130 77 37 7 7 4 5 279 2 7 7 2 6 11 280 3 91 66 51 73 83 115 84 72 75 94 80 83 89 79 77 93 98 81 85 ]
G [ 104 126 109 96 119 109 131 117 86 96 112 116 138 141 92 76 67 185 151 290 286 24 16 19 143 33 297 284 34 8 38 108 119 161 125 107 88 99 138 100 112 103 106 98 110 125 94 89 93 98 ]
T [ 53 50 51 69 59 45 54 67 59 64 53 59 60 47 92 66 43 12 3 3 18 281 12 1 11 1 4 14 261 18 7 43 36 39 62 80 53 42 44 56 55 66 59 48 51 54 58 69 64 67 ]

Hypothetical CWM

A [ -0.00 0.00 -0.00 -0.01 -0.01 -0.00 0.01 -0.00 0.01 -0.01 -0.02 -0.02 -0.00 0.02 0.01 0.01 -0.01 -0.01 -0.01 -0.00 0.02 0.01 -0.00 -0.01 -0.00 -0.01 -0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.01 0.00 -0.01 -0.01 0.02 -0.01 -0.01 0.01 0.00 -0.01 -0.01 0.02 -0.02 -0.00 0.00 0.00 -0.01 -0.01 0.01 -0.00 -0.00 -0.00 -0.00 ]
G [ -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.01 0.00 -0.00 0.02 0.02 -0.00 -0.02 0.01 -0.00 -0.02 0.02 0.02 -0.00 -0.02 0.01 -0.01 -0.00 0.00 0.01 -0.00 -0.01 0.00 0.00 -0.00 -0.00 ]
T [ -0.01 -0.01 -0.01 -0.00 0.01 -0.00 -0.01 -0.01 -0.02 -0.02 -0.00 0.03 -0.01 -0.02 -0.00 -0.01 -0.02 -0.01 0.03 -0.00 -0.02 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 101

7 profiles found for the same TF (NR2C2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000983.1 NR2C2 ENCSR000EVN HeLa-S3 Homo sapiens MA0504.2
BP000984.1 NR2C2 ENCSR000EVS HepG2 Homo sapiens MA0504.2
BP000985.1 NR2C2 ENCSR000EWH K562 Homo sapiens MA0504.2
BP000986.1 NR2C2 ENCSR454GVT WTC11 Homo sapiens MA0504.2
BP000987.1 NR2C2 ENCSR516SWI K562 Homo sapiens MA0504.2
BP000988.1 NR2C2 ENCSR559ZKI HepG2 Homo sapiens MA0504.2
BP000989.1 NR2C2 ENCSR750LYM K562 Homo sapiens MA0504.2
Showing 7 profiles of page 1 from 1 pages
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