JASPAR - NR2C2 - BP000984.1

This page shows detailed deep learning-derived predictions and motifs for NR2C2 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	NR2C2
Model ID:	BP000984.1
Cell line/tissue:	HepG2
Class:	Nuclear receptors with C4 zinc fingers
Family:	RXR-related receptors (NR2)
JASPAR ID:	MA0504.2
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P49116
Source:	ENCSR000EVS
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_1

Number of seqlets: 907

Contribution weight matrix (CWM)

A [	-0.00	-0.00	0.01	0.00	0.01	-0.00	-0.00	-0.00	-0.00	0.05	0.02	0.03	-0.00	-0.00	-0.00	-0.00	0.03	0.00	-0.00	-0.00	-0.00	]
C [	0.00	0.01	0.00	0.00	0.00	0.00	-0.00	-0.00	0.04	0.00	-0.00	0.00	0.00	-0.00	-0.00	0.04	-0.00	0.00	0.00	0.00	0.00	]
G [	0.00	0.00	-0.00	0.01	0.01	0.04	0.04	0.00	-0.00	0.00	0.01	-0.00	0.05	0.04	0.00	-0.00	0.00	-0.00	0.00	0.01	0.01	]
T [	0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.05	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.04	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	]

Frequency matrix

A [	190	195	165	192	192	189	210	188	166	171	188	182	218	187	143	122	125	317	203	414	36	26	11	15	832	465	717	19	13	9	35	704	192	241	168	152	169	197	237	186	208	183	176	189	189	195	167	173	172	191	]
C [	252	219	250	259	217	254	246	230	261	283	244	233	223	189	231	285	374	254	129	42	17	9	41	747	11	30	18	6	18	53	741	32	272	231	163	241	264	263	218	232	239	259	254	240	267	267	274	259	252	235	]
G [	288	310	311	300	328	302	299	344	326	283	306	321	306	369	364	301	238	201	507	435	826	783	123	76	63	381	160	878	754	160	56	152	336	332	433	327	313	289	310	354	292	291	307	309	284	306	318	287	315	311	]
T [	177	183	181	156	170	162	152	145	154	170	169	171	160	162	169	199	170	135	68	16	28	89	732	69	1	31	12	4	122	685	75	19	107	103	143	187	161	158	142	135	168	174	170	169	167	139	148	188	168	170	]

Hypothetical CWM

A [	-0.01	0.00	-0.01	-0.01	-0.02	-0.01	0.01	-0.00	0.02	-0.02	-0.03	-0.05	-0.03	0.05	0.03	0.03	-0.03	-0.04	-0.04	-0.02	0.03	0.01	-0.00	-0.02	-0.01	-0.01	-0.01	-0.00	]
C [	0.01	0.01	0.01	0.01	0.01	0.02	0.01	-0.00	0.00	0.01	-0.03	-0.01	0.05	-0.01	-0.02	-0.00	-0.00	-0.02	-0.01	0.04	-0.02	0.01	0.01	0.00	0.00	0.00	0.01	0.00	]
G [	0.01	0.00	0.01	0.01	0.01	0.01	-0.00	0.01	0.02	0.04	0.05	0.01	-0.02	0.02	0.01	-0.00	0.05	0.04	0.00	-0.02	0.02	-0.00	0.01	0.02	0.01	0.00	-0.00	0.01	]
T [	-0.01	-0.01	-0.01	-0.00	0.01	-0.01	-0.02	-0.01	-0.04	-0.03	0.01	0.06	-0.01	-0.06	-0.02	-0.03	-0.04	0.01	0.05	-0.00	-0.03	-0.01	-0.01	-0.01	-0.00	0.00	-0.00	-0.01	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 1263

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 38

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 36

CWM

PFM

HCWM

7 profiles found for the same TF (NR2C2) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000982.1	NR2C2	ENCSR000EUL	GM12878	Homo sapiens	MA0504.2
BP000983.1	NR2C2	ENCSR000EVN	HeLa-S3	Homo sapiens	MA0504.2
BP000985.1	NR2C2	ENCSR000EWH	K562	Homo sapiens	MA0504.2
BP000986.1	NR2C2	ENCSR454GVT	WTC11	Homo sapiens	MA0504.2
BP000987.1	NR2C2	ENCSR516SWI	K562	Homo sapiens	MA0504.2
BP000988.1	NR2C2	ENCSR559ZKI	HepG2	Homo sapiens	MA0504.2
BP000989.1	NR2C2	ENCSR750LYM	K562	Homo sapiens	MA0504.2