Detailed information of deep learning profile BP000983.1

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This page shows detailed deep learning-derived predictions and motifs for NR2C2 in HeLa-S3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR2C2
Model ID: BP000983.1
Cell line/tissue: HeLa-S3
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA0504.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49116  
Source: ENCSR000EVN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 0.02 0.01 0.01 -0.00 0.00 -0.00 0.00 0.02 0.00 0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.02 0.00 0.00 0.00 0.00 -0.00 -0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.02 0.02 0.00 -0.00 0.00 0.00 -0.00 0.02 0.02 0.00 -0.00 0.00 -0.00 -0.00 0.01 0.01 0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.03 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 87 84 68 92 92 91 83 69 80 86 104 91 74 56 60 147 97 202 31 16 11 22 346 208 302 9 8 3 9 330 133 159 67 55 41 74 135 108 92 77 86 79 80 83 87 85 92 107 92 82 ]
C [ 101 91 91 98 89 83 87 108 100 101 80 81 95 114 144 94 62 28 19 13 30 274 3 19 5 6 4 4 327 3 72 70 61 62 80 155 79 84 69 112 95 96 110 102 97 105 107 87 95 108 ]
G [ 119 127 127 112 122 126 132 126 107 116 111 132 137 119 85 82 179 134 309 295 52 46 23 124 59 356 321 29 13 35 123 93 195 189 100 72 102 122 129 115 111 120 103 116 122 110 98 96 108 105 ]
T [ 66 71 87 71 70 73 71 70 86 70 78 69 67 84 84 50 35 9 14 49 280 31 1 22 7 2 40 337 24 5 45 51 50 67 152 72 57 59 83 69 81 78 80 72 67 73 76 83 78 78 ]

Hypothetical CWM

   
A [ -0.00 -0.01 -0.01 -0.00 0.01 -0.00 0.01 -0.01 -0.02 -0.02 -0.00 0.02 0.01 0.01 -0.00 -0.01 -0.02 -0.00 0.02 0.01 0.00 -0.01 -0.00 -0.01 -0.00 0.00 0.00 -0.00 ]
C [ 0.01 0.00 0.00 0.01 0.01 0.00 0.01 0.01 0.00 -0.00 0.02 -0.01 -0.00 0.01 0.01 -0.01 -0.01 0.03 -0.01 -0.00 0.01 0.01 -0.00 -0.00 0.01 -0.00 0.00 0.00 ]
G [ 0.01 0.01 0.01 0.00 0.00 0.01 0.00 0.02 0.02 0.00 -0.00 0.01 0.00 -0.01 0.02 0.02 0.00 -0.01 0.02 -0.00 -0.00 0.01 0.01 0.00 -0.00 0.01 0.00 0.00 ]
T [ -0.01 -0.00 0.00 -0.00 -0.01 -0.01 -0.02 -0.01 -0.00 0.02 -0.01 -0.03 -0.00 -0.01 -0.02 -0.00 0.03 -0.00 -0.02 -0.00 0.00 -0.01 -0.00 0.01 -0.00 -0.01 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 1064

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 223

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 101

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 95

CWM

PFM

     

HCWM

7 profiles found for the same TF (NR2C2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000982.1 NR2C2 ENCSR000EUL GM12878 Homo sapiens MA0504.2
BP000984.1 NR2C2 ENCSR000EVS HepG2 Homo sapiens MA0504.2
BP000985.1 NR2C2 ENCSR000EWH K562 Homo sapiens MA0504.2
BP000986.1 NR2C2 ENCSR454GVT WTC11 Homo sapiens MA0504.2
BP000987.1 NR2C2 ENCSR516SWI K562 Homo sapiens MA0504.2
BP000988.1 NR2C2 ENCSR559ZKI HepG2 Homo sapiens MA0504.2
BP000989.1 NR2C2 ENCSR750LYM K562 Homo sapiens MA0504.2
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