Detailed information of deep learning profile BP000986.1

  1. Home
  2. Deep Learning Profile > BP000986.1
This page shows detailed deep learning-derived predictions and motifs for NR2C2 in WTC11 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR2C2
Model ID: BP000986.1
Cell line/tissue: WTC11
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA0504.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49116  
Source: ENCSR454GVT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 0.00 0.01 -0.00 -0.00 0.00 -0.00 0.02 0.01 0.01 -0.00 -0.00 -0.00 -0.00 0.02 0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.02 0.00 -0.00 0.00 0.00 0.00 -0.00 0.02 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 -0.00 0.00 0.00 0.02 0.02 -0.00 -0.00 0.00 0.00 0.00 0.02 0.02 0.00 -0.00 0.00 0.00 0.00 0.01 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.03 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.02 0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 60 53 58 62 63 49 47 60 52 69 60 77 59 45 44 36 113 74 166 9 4 3 2 280 149 256 5 2 6 7 248 70 99 70 49 53 53 71 55 68 62 66 56 59 65 55 66 51 65 52 ]
C [ 79 89 113 73 80 95 82 75 117 83 83 60 50 84 97 129 95 43 6 6 3 3 274 8 9 1 2 4 13 272 8 91 75 56 75 93 115 79 70 75 96 90 94 103 99 89 93 112 100 93 ]
G [ 113 130 99 113 129 128 149 131 97 105 116 129 144 135 101 87 73 192 143 302 296 26 27 31 149 61 312 293 48 19 51 120 118 160 140 93 98 117 140 122 110 94 113 100 109 121 107 101 100 120 ]
T [ 68 48 50 72 48 48 42 54 54 63 61 54 67 56 78 68 39 11 5 3 17 288 17 1 13 2 1 21 253 22 13 39 28 34 56 81 54 53 55 55 52 70 57 58 47 55 54 56 55 55 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.01 -0.00 -0.01 -0.01 -0.01 -0.01 0.00 -0.00 0.01 -0.02 -0.02 -0.01 -0.02 0.02 0.01 0.02 -0.02 -0.02 -0.01 -0.01 0.02 0.00 -0.00 -0.01 -0.01 -0.01 -0.01 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 -0.01 -0.02 0.03 -0.01 -0.00 -0.00 -0.00 -0.01 -0.01 0.02 -0.01 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 ]
G [ -0.00 -0.00 0.00 0.00 0.01 0.00 -0.00 -0.00 -0.00 0.01 0.01 0.02 0.02 -0.00 -0.01 0.01 0.00 0.00 0.02 0.03 0.00 -0.01 0.01 0.00 0.00 0.01 0.01 -0.00 -0.00 0.00 ]
T [ -0.00 -0.00 -0.01 -0.01 -0.01 -0.00 0.00 0.00 -0.01 -0.01 -0.02 -0.02 0.00 0.03 -0.01 -0.03 -0.01 -0.02 -0.02 0.00 0.02 -0.00 -0.02 -0.00 -0.01 -0.01 -0.00 0.00 -0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 601

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 256

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 54

CWM

PFM

     

HCWM

7 profiles found for the same TF (NR2C2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000982.1 NR2C2 ENCSR000EUL GM12878 Homo sapiens MA0504.2
BP000983.1 NR2C2 ENCSR000EVN HeLa-S3 Homo sapiens MA0504.2
BP000984.1 NR2C2 ENCSR000EVS HepG2 Homo sapiens MA0504.2
BP000985.1 NR2C2 ENCSR000EWH K562 Homo sapiens MA0504.2
BP000987.1 NR2C2 ENCSR516SWI K562 Homo sapiens MA0504.2
BP000988.1 NR2C2 ENCSR559ZKI HepG2 Homo sapiens MA0504.2
BP000989.1 NR2C2 ENCSR750LYM K562 Homo sapiens MA0504.2
Showing 7 profiles of page 1 from 1 pages
  • 1 (current)