JASPAR - NR2C2 - BP000987.1

This page shows detailed deep learning-derived predictions and motifs for NR2C2 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	NR2C2
Model ID:	BP000987.1
Cell line/tissue:	K562
Class:	Nuclear receptors with C4 zinc fingers
Family:	RXR-related receptors (NR2)
JASPAR ID:	MA0504.2
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P49116
Source:	ENCSR516SWI
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 2072

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.00	0.00	-0.00	0.00	0.03	0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.04	0.00	-0.00	-0.00	-0.00	0.00	0.00	]
C [	0.00	0.00	0.00	-0.00	0.00	-0.00	0.00	0.03	0.04	0.00	0.00	0.00	-0.00	0.00	0.04	0.03	0.01	0.01	0.00	0.00	]
G [	0.00	0.00	0.00	0.00	0.00	0.02	0.00	0.00	0.00	0.00	-0.00	0.00	0.03	-0.00	-0.00	0.00	0.00	0.00	0.01	0.00	]
T [	0.00	-0.00	0.00	0.00	0.02	-0.00	-0.00	-0.00	-0.00	0.02	0.01	0.04	-0.00	-0.00	-0.00	-0.00	0.01	0.00	-0.00	-0.00	]

Frequency matrix

A [	424	413	398	376	388	382	448	394	404	402	399	352	478	466	428	386	309	310	94	272	1325	348	86	65	100	14	117	1815	201	43	15	175	394	447	530	420	367	384	442	462	386	366	357	354	372	452	391	397	386	416	]
C [	649	642	633	712	683	640	639	644	682	690	741	661	602	679	682	778	738	754	477	287	412	1508	1769	497	833	125	132	183	1833	1908	873	1156	396	549	618	728	814	733	672	665	664	725	786	694	706	671	703	674	708	668	]
G [	553	565	598	591	545	614	534	540	564	500	496	551	581	556	534	511	482	567	176	1368	249	127	103	142	181	15	1797	62	15	54	76	230	563	780	587	490	454	477	512	515	588	529	482	517	539	480	498	569	544	513	]
T [	446	452	443	393	456	436	451	494	422	480	436	508	411	371	428	397	543	441	1325	145	86	89	114	1368	958	1918	26	12	23	67	1108	511	719	296	337	434	437	478	446	430	434	452	447	507	455	469	480	432	434	475	]

Hypothetical CWM

A [	-0.00	-0.00	-0.00	0.00	-0.02	0.01	0.03	0.02	-0.02	-0.02	0.00	-0.03	0.01	0.04	0.02	-0.02	-0.03	-0.00	0.00	0.00	0.01	]
C [	0.01	0.01	0.01	0.00	0.02	-0.01	0.01	0.03	0.04	0.01	0.01	0.02	-0.00	0.01	0.04	0.03	0.02	0.01	0.00	0.00	0.00	]
G [	0.00	0.01	0.01	0.01	-0.01	0.03	-0.01	-0.02	0.00	0.00	-0.01	-0.01	0.04	-0.00	-0.03	0.01	0.00	0.00	0.01	0.01	0.01	]
T [	-0.00	-0.00	0.00	0.00	0.02	-0.01	-0.02	-0.02	-0.02	0.03	0.03	0.04	-0.02	-0.03	-0.02	-0.02	0.03	0.00	0.01	-0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1470

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 272

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 207

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 112

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 95

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 83

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 40

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 21

CWM

PFM

HCWM

7 profiles found for the same TF (NR2C2) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000982.1	NR2C2	ENCSR000EUL	GM12878	Homo sapiens	MA0504.2
BP000983.1	NR2C2	ENCSR000EVN	HeLa-S3	Homo sapiens	MA0504.2
BP000984.1	NR2C2	ENCSR000EVS	HepG2	Homo sapiens	MA0504.2
BP000985.1	NR2C2	ENCSR000EWH	K562	Homo sapiens	MA0504.2
BP000986.1	NR2C2	ENCSR454GVT	WTC11	Homo sapiens	MA0504.2
BP000988.1	NR2C2	ENCSR559ZKI	HepG2	Homo sapiens	MA0504.2
BP000989.1	NR2C2	ENCSR750LYM	K562	Homo sapiens	MA0504.2