Detailed information of deep learning profile BP000988.1

This page shows detailed deep learning-derived predictions and motifs for NR2C2 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR2C2
Model ID: BP000988.1
Cell line/tissue: HepG2
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA0504.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49116  
Source: ENCSR559ZKI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.02 0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.02 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.02 0.06 0.00 0.00 0.00 -0.00 -0.00 0.03 0.04 0.01 0.01 -0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.03 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.04 0.00 -0.00 0.00 0.00 0.00 0.00 0.01 0.00 ]
T [ -0.00 -0.00 0.00 0.00 0.03 -0.00 -0.00 -0.00 -0.00 0.03 0.02 0.05 -0.00 -0.00 -0.00 -0.00 0.01 0.00 0.00 -0.00 -0.00 ]

Frequency matrix

A [ 1346 1450 1492 1509 1407 1489 1419 1353 1421 1439 1444 1399 1448 1457 1555 1640 1606 1242 1121 435 825 3637 2665 43 48 237 17 564 3598 1575 238 341 706 1339 1545 1540 1394 1387 1387 1452 1538 1549 1472 1496 1382 1483 1491 1465 1465 1459 ]
C [ 1803 1768 1721 1678 1903 1881 1752 1863 1755 1780 1728 1847 1741 1764 1760 1908 2237 1935 2077 694 329 1204 3435 6345 666 1519 202 330 1244 4058 5763 2669 2768 1284 1370 1721 1866 2062 1873 1832 1786 1668 1790 1805 1746 1759 1813 1864 1829 1876 ]
G [ 1682 1627 1687 1670 1708 1489 1741 1595 1713 1682 1589 1591 1575 1734 1786 1550 1326 1453 1607 315 5124 1407 77 15 15 148 37 5472 1102 240 91 160 1176 1484 2274 1857 1668 1391 1448 1471 1546 1614 1710 1597 1647 1657 1551 1602 1651 1597 ]
T [ 1635 1621 1566 1609 1448 1607 1554 1655 1577 1565 1705 1629 1702 1511 1365 1368 1297 1836 1661 5022 188 218 289 63 5737 4562 6210 100 522 593 374 3296 1816 2359 1277 1348 1538 1626 1758 1711 1596 1635 1494 1568 1691 1567 1611 1535 1521 1534 ]

Hypothetical CWM

A [ 0.00 -0.00 -0.00 0.00 -0.02 0.01 0.03 0.03 -0.02 -0.02 -0.00 -0.03 0.01 0.04 0.02 -0.01 -0.03 -0.01 -0.00 0.00 0.00 ]
C [ 0.01 0.01 0.01 0.00 0.02 -0.01 0.01 0.04 0.06 0.01 0.01 0.02 0.00 0.01 0.04 0.05 0.02 0.01 0.01 0.00 0.01 ]
G [ 0.00 0.01 0.01 0.01 -0.02 0.04 0.01 -0.02 -0.01 -0.01 -0.02 -0.01 0.05 0.01 -0.02 -0.00 0.00 0.01 0.01 0.02 0.01 ]
T [ -0.00 -0.01 0.00 0.00 0.03 -0.02 -0.02 -0.01 -0.01 0.04 0.04 0.05 -0.02 -0.02 -0.01 -0.01 0.02 0.01 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 5212

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 4404

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2274

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1814

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1236

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 112

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 69

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 55

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 43

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 22

7 profiles found for the same TF (NR2C2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000982.1 NR2C2 ENCSR000EUL GM12878 Homo sapiens MA0504.2
BP000983.1 NR2C2 ENCSR000EVN HeLa-S3 Homo sapiens MA0504.2
BP000984.1 NR2C2 ENCSR000EVS HepG2 Homo sapiens MA0504.2
BP000985.1 NR2C2 ENCSR000EWH K562 Homo sapiens MA0504.2
BP000986.1 NR2C2 ENCSR454GVT WTC11 Homo sapiens MA0504.2
BP000987.1 NR2C2 ENCSR516SWI K562 Homo sapiens MA0504.2
BP000989.1 NR2C2 ENCSR750LYM K562 Homo sapiens MA0504.2
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