JASPAR - NR2C2 - BP000988.1

This page shows detailed deep learning-derived predictions and motifs for NR2C2 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	NR2C2
Model ID:	BP000988.1
Cell line/tissue:	HepG2
Class:	Nuclear receptors with C4 zinc fingers
Family:	RXR-related receptors (NR2)
JASPAR ID:	MA0504.2
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P49116
Source:	ENCSR559ZKI
Model:	BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 6466

Contribution weight matrix (CWM)

A [	-0.00	-0.00	0.00	0.00	0.01	-0.00	-0.00	-0.00	-0.00	0.05	0.02	0.03	-0.00	-0.00	-0.00	-0.00	0.03	0.00	0.00	-0.00	-0.00	]
C [	0.00	0.01	0.00	0.00	0.00	0.00	-0.00	0.00	0.04	-0.00	-0.00	-0.00	0.00	-0.00	0.00	0.03	-0.00	0.00	0.00	0.00	0.00	]
G [	0.00	0.00	-0.00	0.01	0.01	0.04	0.03	-0.00	-0.00	0.00	0.00	0.00	0.06	0.02	0.00	-0.00	0.00	-0.00	0.00	0.00	0.00	]
T [	0.00	0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.02	0.00	-0.00	-0.00	-0.00	-0.00	0.01	0.02	0.00	-0.00	-0.00	-0.00	0.00	0.00	]

Frequency matrix

A [	1534	1521	1535	1611	1567	1691	1568	1494	1635	1596	1711	1758	1626	1538	1348	1277	2359	1816	3296	374	593	522	100	6210	4562	5737	63	289	218	188	5022	1661	1836	1297	1368	1365	1511	1702	1629	1705	1565	1577	1655	1554	1607	1448	1609	1566	1621	1635	]
C [	1597	1651	1602	1551	1657	1647	1597	1710	1614	1546	1471	1448	1391	1668	1857	2274	1484	1176	160	91	240	1102	5472	37	148	15	15	77	1407	5124	315	1607	1453	1326	1550	1786	1734	1575	1591	1589	1682	1713	1595	1741	1489	1708	1670	1687	1627	1682	]
G [	1876	1829	1864	1813	1759	1746	1805	1790	1668	1786	1832	1873	2062	1866	1721	1370	1284	2768	2669	5763	4058	1244	330	202	1519	666	6345	3435	1204	329	694	2077	1935	2237	1908	1760	1764	1741	1847	1728	1780	1755	1863	1752	1881	1903	1678	1721	1768	1803	]
T [	1459	1465	1465	1491	1483	1382	1496	1472	1549	1538	1452	1387	1387	1394	1540	1545	1339	706	341	238	1575	3598	564	17	237	48	43	2665	3637	825	435	1121	1242	1606	1640	1555	1457	1448	1399	1444	1439	1421	1353	1419	1489	1407	1509	1492	1450	1346	]

Hypothetical CWM

A [	-0.00	-0.00	0.01	0.01	0.02	-0.01	-0.01	-0.02	-0.02	0.05	0.04	0.04	-0.01	-0.01	-0.02	-0.02	0.03	0.00	0.00	-0.01	-0.00	]
C [	0.01	0.02	0.01	0.01	0.00	-0.00	-0.02	0.01	0.05	-0.01	-0.02	-0.01	-0.01	-0.02	0.01	0.04	-0.02	0.01	0.01	0.01	0.00	]
G [	0.01	0.00	0.01	0.01	0.02	0.05	0.04	0.01	0.00	0.02	0.01	0.01	0.06	0.04	0.01	-0.01	0.02	0.00	0.01	0.01	0.01	]
T [	0.00	0.00	-0.00	-0.01	-0.03	-0.01	0.02	0.04	0.01	-0.03	-0.00	-0.02	-0.02	0.03	0.03	0.01	-0.02	0.00	-0.00	-0.00	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 5212

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 4404

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2274

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1814

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1236

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 112

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 69

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 55

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 43

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 22

CWM

PFM

HCWM

7 profiles found for the same TF (NR2C2) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000982.1	NR2C2	ENCSR000EUL	GM12878	Homo sapiens	MA0504.2
BP000983.1	NR2C2	ENCSR000EVN	HeLa-S3	Homo sapiens	MA0504.2
BP000984.1	NR2C2	ENCSR000EVS	HepG2	Homo sapiens	MA0504.2
BP000985.1	NR2C2	ENCSR000EWH	K562	Homo sapiens	MA0504.2
BP000986.1	NR2C2	ENCSR454GVT	WTC11	Homo sapiens	MA0504.2
BP000987.1	NR2C2	ENCSR516SWI	K562	Homo sapiens	MA0504.2
BP000989.1	NR2C2	ENCSR750LYM	K562	Homo sapiens	MA0504.2