JASPAR - NR2C2 - BP000987.1

This page shows detailed deep learning-derived predictions and motifs for NR2C2 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	NR2C2
Model ID:	BP000987.1
Cell line/tissue:	K562
Class:	Nuclear receptors with C4 zinc fingers
Family:	RXR-related receptors (NR2)
JASPAR ID:	MA0504.2
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P49116
Source:	ENCSR516SWI
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 2072

Contribution weight matrix (CWM)

A [	-0.00	-0.00	0.00	0.01	-0.00	-0.00	-0.00	-0.00	0.04	0.01	0.02	-0.00	-0.00	-0.00	-0.00	0.02	0.00	0.00	-0.00	0.00	]
C [	0.00	0.01	0.00	0.00	0.00	-0.00	-0.00	0.03	0.00	-0.00	0.00	0.00	0.00	0.00	0.02	0.00	0.00	0.00	0.00	0.00	]
G [	0.00	0.00	0.01	0.01	0.03	0.04	0.00	-0.00	0.00	0.00	0.00	0.04	0.03	0.00	-0.00	0.00	-0.00	0.00	0.00	0.00	]
T [	0.00	0.00	-0.00	-0.00	-0.00	0.00	0.04	0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.03	0.00	-0.00	0.00	-0.00	-0.00	-0.00	]

Frequency matrix

A [	475	434	432	480	469	455	507	447	452	434	430	446	478	437	434	337	296	719	511	1108	67	23	12	26	1918	958	1368	114	89	86	145	1325	441	543	397	428	371	411	508	436	480	422	494	451	436	456	393	443	452	446	]
C [	513	544	569	498	480	539	517	482	529	588	515	512	477	454	490	587	780	563	230	76	54	15	62	1797	15	181	142	103	127	249	1368	176	567	482	511	534	556	581	551	496	500	564	540	534	614	545	591	598	565	553	]
G [	668	708	674	703	671	706	694	786	725	664	665	672	733	814	728	618	549	396	1156	873	1908	1833	183	132	125	833	497	1769	1508	412	287	477	754	738	778	682	679	602	661	741	690	682	644	639	640	683	712	633	642	649	]
T [	416	386	397	391	452	372	354	357	366	386	462	442	384	367	420	530	447	394	175	15	43	201	1815	117	14	100	65	86	348	1325	272	94	310	309	386	428	466	478	352	399	402	404	394	448	382	388	376	398	413	424	]

Hypothetical CWM

A [	-0.00	-0.00	0.01	0.00	0.03	-0.02	-0.02	-0.03	-0.02	0.04	0.03	0.03	-0.02	-0.02	-0.02	-0.01	0.02	0.00	0.00	-0.00	-0.00	]
C [	0.01	0.01	0.01	0.00	0.00	0.01	-0.03	-0.00	0.04	-0.01	-0.01	0.00	0.00	-0.02	-0.01	0.03	-0.01	0.01	0.01	0.01	0.00	]
G [	0.00	0.00	0.00	0.01	0.02	0.03	0.04	0.01	-0.00	0.02	0.01	0.01	0.04	0.03	0.01	-0.01	0.02	0.00	0.01	0.01	0.01	]
T [	0.01	0.00	0.00	-0.00	-0.03	-0.02	0.02	0.04	0.01	-0.03	0.00	-0.02	-0.02	0.02	0.03	0.01	-0.02	0.00	-0.00	-0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1470

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 272

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 207

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 112

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 95

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 83

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 40

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 21

CWM

PFM

HCWM

7 profiles found for the same TF (NR2C2) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000982.1	NR2C2	ENCSR000EUL	GM12878	Homo sapiens	MA0504.2
BP000983.1	NR2C2	ENCSR000EVN	HeLa-S3	Homo sapiens	MA0504.2
BP000984.1	NR2C2	ENCSR000EVS	HepG2	Homo sapiens	MA0504.2
BP000985.1	NR2C2	ENCSR000EWH	K562	Homo sapiens	MA0504.2
BP000986.1	NR2C2	ENCSR454GVT	WTC11	Homo sapiens	MA0504.2
BP000988.1	NR2C2	ENCSR559ZKI	HepG2	Homo sapiens	MA0504.2
BP000989.1	NR2C2	ENCSR750LYM	K562	Homo sapiens	MA0504.2