Detailed information of deep learning profile BP000986.1

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This page shows detailed deep learning-derived predictions and motifs for NR2C2 in WTC11 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR2C2
Model ID: BP000986.1
Cell line/tissue: WTC11
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA0504.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49116  
Source: ENCSR454GVT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.02 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.03 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.01 0.00 0.00 0.00 -0.00 0.00 0.02 0.02 0.00 0.00 0.00 -0.00 -0.00 0.02 0.02 0.00 0.00 -0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.02 -0.00 0.00 0.00 0.00 -0.00 0.00 0.02 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 0.01 0.02 -0.00 0.00 -0.00 -0.00 0.01 0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 55 55 56 54 55 47 58 57 70 52 55 55 53 54 81 56 34 28 39 13 22 253 21 1 2 13 1 17 288 17 3 5 11 39 68 78 56 67 54 61 63 54 54 42 48 48 72 50 48 68 ]
C [ 120 100 101 107 121 109 100 113 94 110 122 140 117 98 93 140 160 118 120 51 19 48 293 312 61 149 31 27 26 296 302 143 192 73 87 101 135 144 129 116 105 97 131 149 128 129 113 99 130 113 ]
G [ 93 100 112 93 89 99 103 94 90 96 75 70 79 115 93 75 56 75 91 8 272 13 4 2 1 9 8 274 3 3 6 6 43 95 129 97 84 50 60 83 83 117 75 82 95 80 73 113 89 79 ]
T [ 52 65 51 66 55 65 59 56 66 62 68 55 71 53 53 49 70 99 70 248 7 6 2 5 256 149 280 2 3 4 9 166 74 113 36 44 45 59 77 60 69 52 60 47 49 63 62 58 53 60 ]

Hypothetical CWM

   
A [ -0.01 -0.00 0.00 -0.00 -0.01 -0.01 -0.00 -0.02 -0.00 0.02 0.00 -0.02 -0.02 -0.01 -0.03 -0.01 0.03 0.00 -0.02 -0.02 -0.01 -0.01 0.00 0.00 -0.00 -0.01 -0.01 -0.01 -0.00 -0.00 ]
C [ 0.00 -0.00 -0.00 0.01 0.01 0.00 0.00 0.01 -0.01 0.00 0.03 0.02 0.00 0.00 0.01 -0.01 -0.00 0.02 0.02 0.01 0.01 -0.00 -0.00 -0.00 0.00 0.01 0.00 0.00 -0.00 -0.00 ]
G [ -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 -0.01 0.02 -0.01 -0.01 -0.00 -0.00 -0.00 -0.01 0.03 -0.02 -0.01 0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.01 -0.01 -0.01 -0.01 -0.00 0.00 0.02 -0.01 -0.01 -0.02 -0.02 0.02 0.01 0.02 -0.02 -0.01 -0.02 -0.02 0.01 -0.00 0.00 -0.01 -0.01 -0.01 -0.01 -0.00 -0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 601

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 256

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 54

CWM

PFM

     

HCWM

7 profiles found for the same TF (NR2C2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000982.1 NR2C2 ENCSR000EUL GM12878 Homo sapiens MA0504.2
BP000983.1 NR2C2 ENCSR000EVN HeLa-S3 Homo sapiens MA0504.2
BP000984.1 NR2C2 ENCSR000EVS HepG2 Homo sapiens MA0504.2
BP000985.1 NR2C2 ENCSR000EWH K562 Homo sapiens MA0504.2
BP000987.1 NR2C2 ENCSR516SWI K562 Homo sapiens MA0504.2
BP000988.1 NR2C2 ENCSR559ZKI HepG2 Homo sapiens MA0504.2
BP000989.1 NR2C2 ENCSR750LYM K562 Homo sapiens MA0504.2
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