Detailed information of deep learning profile BP000984.1

  1. Home
  2. Deep Learning Profile > BP000984.1
This page shows detailed deep learning-derived predictions and motifs for NR2C2 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR2C2
Model ID: BP000984.1
Cell line/tissue: HepG2
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA0504.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49116  
Source: ENCSR000EVS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.04 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.05 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]
C [ 0.01 0.01 0.00 -0.00 0.00 -0.00 0.00 0.04 0.05 -0.00 0.01 0.00 -0.00 0.00 0.04 0.04 0.01 0.01 -0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.04 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.04 -0.00 -0.00 0.00 0.00 0.00 0.00 0.01 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 0.03 -0.00 -0.00 -0.00 -0.00 0.03 0.02 0.05 -0.00 -0.00 -0.00 -0.00 0.01 0.00 0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 170 168 188 148 139 167 169 170 174 168 135 142 158 161 187 143 103 107 19 75 685 122 4 12 31 1 69 732 89 28 16 68 135 170 199 169 162 160 171 169 170 154 145 152 162 170 156 181 183 177 ]
C [ 311 315 287 318 306 284 309 307 291 292 354 310 289 313 327 433 332 336 152 56 160 754 878 160 381 63 76 123 783 826 435 507 201 238 301 364 369 306 321 306 283 326 344 299 302 328 300 311 310 288 ]
G [ 235 252 259 274 267 267 240 254 259 239 232 218 263 264 241 163 231 272 32 741 53 18 6 18 30 11 747 41 9 17 42 129 254 374 285 231 189 223 233 244 283 261 230 246 254 217 259 250 219 252 ]
T [ 191 172 173 167 195 189 189 176 183 208 186 237 197 169 152 168 241 192 704 35 9 13 19 717 465 832 15 11 26 36 414 203 317 125 122 143 187 218 182 188 171 166 188 210 189 192 192 165 195 190 ]

Hypothetical CWM

   
A [ -0.01 -0.00 0.00 -0.00 -0.01 -0.01 -0.01 -0.03 -0.00 0.05 0.01 -0.04 -0.03 -0.02 -0.06 -0.01 0.06 0.01 -0.03 -0.04 -0.01 -0.02 -0.01 0.01 -0.00 -0.01 -0.01 -0.01 ]
C [ 0.01 -0.00 0.00 0.01 0.02 0.01 -0.00 0.02 -0.02 0.00 0.04 0.05 -0.00 0.01 0.02 -0.02 0.01 0.05 0.04 0.02 0.01 -0.00 0.01 0.01 0.01 0.01 0.00 0.01 ]
G [ 0.00 0.01 0.00 0.00 0.00 0.01 0.01 -0.02 0.04 -0.01 -0.02 -0.00 -0.00 -0.02 -0.01 0.05 -0.01 -0.03 0.01 0.00 -0.00 0.01 0.02 0.01 0.01 0.01 0.01 0.01 ]
T [ -0.00 -0.01 -0.01 -0.01 -0.02 -0.00 0.01 0.03 -0.02 -0.04 -0.04 -0.03 0.03 0.03 0.05 -0.03 -0.05 -0.03 -0.02 0.02 -0.00 0.01 -0.01 -0.02 -0.01 -0.01 0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 1263

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 38

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 36

CWM

PFM

     

HCWM

7 profiles found for the same TF (NR2C2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000982.1 NR2C2 ENCSR000EUL GM12878 Homo sapiens MA0504.2
BP000983.1 NR2C2 ENCSR000EVN HeLa-S3 Homo sapiens MA0504.2
BP000985.1 NR2C2 ENCSR000EWH K562 Homo sapiens MA0504.2
BP000986.1 NR2C2 ENCSR454GVT WTC11 Homo sapiens MA0504.2
BP000987.1 NR2C2 ENCSR516SWI K562 Homo sapiens MA0504.2
BP000988.1 NR2C2 ENCSR559ZKI HepG2 Homo sapiens MA0504.2
BP000989.1 NR2C2 ENCSR750LYM K562 Homo sapiens MA0504.2
Showing 7 profiles of page 1 from 1 pages
  • 1 (current)