JASPAR - NR2C2 - BP000983.1

This page shows detailed deep learning-derived predictions and motifs for NR2C2 in HeLa-S3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	NR2C2
Model ID:	BP000983.1
Cell line/tissue:	HeLa-S3
Class:	Nuclear receptors with C4 zinc fingers
Family:	RXR-related receptors (NR2)
JASPAR ID:	MA0504.2
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P49116
Source:	ENCSR000EVN
Model:	BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_1

Number of seqlets: 373

Contribution weight matrix (CWM)

A [	0.00	-0.00	-0.00	0.00	0.01	-0.00	-0.00	0.00	-0.00	-0.00	0.00	0.03	0.00	-0.00	-0.00	0.00	-0.00	-0.00	0.02	0.00	-0.00	-0.00	-0.00	-0.00	-0.00	]
C [	0.00	0.00	0.00	-0.00	0.00	0.01	0.01	-0.00	-0.00	0.00	-0.00	0.00	0.02	0.02	-0.00	0.00	0.00	-0.00	0.00	0.02	0.02	0.00	0.00	0.00	0.00	]
G [	0.00	0.00	0.00	0.01	0.00	0.00	0.00	0.00	0.00	0.00	0.02	-0.00	-0.00	0.00	0.00	0.00	0.00	0.02	0.00	-0.00	0.00	0.00	0.00	0.00	0.00	]
T [	-0.00	0.00	0.00	-0.00	-0.00	0.00	-0.00	0.00	0.00	0.02	0.00	-0.00	0.00	-0.00	0.01	0.01	0.02	0.00	-0.00	-0.00	-0.00	0.01	-0.00	0.00	-0.00	]

Frequency matrix

A [	78	78	83	76	73	67	72	80	78	81	69	83	59	57	72	152	67	50	51	45	5	24	337	40	2	7	22	1	31	280	49	14	9	35	50	84	84	67	69	78	70	86	70	71	73	70	71	87	71	66	]
C [	105	108	96	98	110	122	116	103	120	111	115	129	122	102	72	100	189	195	93	123	35	13	29	321	356	59	124	23	46	52	295	309	134	179	82	85	119	137	132	111	116	107	126	132	126	122	112	127	127	119	]
G [	108	95	87	107	105	97	102	110	96	95	112	69	84	79	155	80	62	61	70	72	3	327	4	4	6	5	19	3	274	30	13	19	28	62	94	144	114	95	81	80	101	100	108	87	83	89	98	91	91	101	]
T [	82	92	107	92	85	87	83	80	79	86	77	92	108	135	74	41	55	67	159	133	330	9	3	8	9	302	208	346	22	11	16	31	202	97	147	60	56	74	91	104	86	80	69	83	91	92	92	68	84	87	]

Hypothetical CWM

A [	0.00	-0.00	-0.01	-0.00	0.01	-0.00	-0.01	0.00	-0.00	-0.02	-0.00	0.03	-0.00	-0.02	-0.01	-0.00	-0.03	-0.01	0.02	-0.00	-0.01	-0.02	-0.01	-0.01	-0.00	0.00	-0.00	-0.01	]
C [	0.00	0.00	0.01	-0.00	0.00	0.01	0.01	-0.00	-0.00	0.02	-0.01	0.00	0.02	0.02	-0.01	0.00	0.01	-0.00	0.00	0.02	0.02	0.00	0.01	0.00	0.00	0.01	0.01	0.01	]
G [	0.00	0.00	-0.00	0.01	-0.00	-0.00	0.01	0.01	-0.00	-0.01	0.03	-0.01	-0.01	0.01	0.01	-0.00	-0.01	0.02	-0.00	0.00	0.01	0.01	0.00	0.01	0.01	0.00	0.00	0.01	]
T [	-0.00	0.00	0.00	-0.00	-0.01	-0.00	-0.01	0.00	0.01	0.02	-0.00	-0.02	-0.01	-0.00	0.01	0.01	0.02	-0.00	-0.02	-0.02	-0.01	0.01	-0.00	0.01	-0.00	-0.01	-0.01	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 1064

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 223

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 101

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 95

CWM

PFM

HCWM

7 profiles found for the same TF (NR2C2) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000982.1	NR2C2	ENCSR000EUL	GM12878	Homo sapiens	MA0504.2
BP000984.1	NR2C2	ENCSR000EVS	HepG2	Homo sapiens	MA0504.2
BP000985.1	NR2C2	ENCSR000EWH	K562	Homo sapiens	MA0504.2
BP000986.1	NR2C2	ENCSR454GVT	WTC11	Homo sapiens	MA0504.2
BP000987.1	NR2C2	ENCSR516SWI	K562	Homo sapiens	MA0504.2
BP000988.1	NR2C2	ENCSR559ZKI	HepG2	Homo sapiens	MA0504.2
BP000989.1	NR2C2	ENCSR750LYM	K562	Homo sapiens	MA0504.2