Detailed information of deep learning profile BP000982.1

This page shows detailed deep learning-derived predictions and motifs for NR2C2 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR2C2
Model ID: BP000982.1
Cell line/tissue: GM12878
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA0504.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49116  
Source: ENCSR000EUL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.03 0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]
C [ 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 0.02 -0.00 0.00 0.00 -0.00 0.00 0.02 0.02 0.00 0.00 -0.00 0.00 ]
G [ -0.00 0.00 0.00 0.00 -0.00 0.02 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.02 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.01 0.02 -0.00 0.00 -0.00 -0.00 0.01 0.00 0.00 -0.00 ]

Frequency matrix

A [ 67 64 69 58 54 51 48 59 66 55 56 44 42 53 80 62 39 36 43 7 18 261 14 4 1 11 1 12 281 18 3 3 12 43 66 92 47 60 59 53 64 59 67 54 45 59 69 51 50 53 ]
C [ 98 93 89 94 125 110 98 106 103 112 100 138 99 88 107 125 161 119 108 38 8 34 284 297 33 143 19 16 24 286 290 151 185 67 76 92 141 138 116 112 96 86 117 131 109 119 96 109 126 104 ]
G [ 85 81 98 93 77 79 89 83 80 94 75 72 84 115 83 73 51 66 91 3 280 11 6 2 7 7 2 279 5 4 7 7 37 77 130 84 78 50 57 78 66 95 68 61 82 69 67 79 72 76 ]
T [ 60 72 54 65 54 70 75 62 61 49 79 56 85 54 40 50 59 89 68 262 4 4 6 7 269 149 288 3 0 2 10 149 76 123 38 42 44 62 78 67 84 70 58 64 74 63 78 71 62 77 ]

Hypothetical CWM

A [ -0.00 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.02 -0.00 0.03 -0.01 -0.02 -0.01 -0.00 -0.02 -0.01 0.03 -0.00 -0.02 -0.02 -0.01 -0.01 -0.00 0.01 -0.00 -0.01 -0.01 -0.01 ]
C [ -0.00 -0.00 0.00 0.00 -0.01 -0.00 0.01 0.00 -0.00 -0.01 0.01 -0.02 -0.00 0.02 0.02 -0.02 -0.00 0.01 -0.02 -0.00 0.02 0.02 -0.00 0.00 -0.01 -0.00 -0.00 0.00 0.00 -0.00 -0.00 ]
G [ -0.00 -0.00 -0.00 -0.00 0.01 -0.01 -0.01 0.00 0.00 -0.00 -0.02 0.02 -0.01 -0.01 0.00 0.01 -0.01 -0.01 0.02 -0.01 -0.01 0.00 0.01 -0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.01 -0.00 -0.01 -0.00 0.01 0.02 -0.00 -0.01 -0.01 -0.01 0.01 0.01 0.02 -0.00 -0.02 -0.02 -0.01 0.01 -0.00 0.01 -0.00 -0.01 -0.01 -0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 101

7 profiles found for the same TF (NR2C2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000983.1 NR2C2 ENCSR000EVN HeLa-S3 Homo sapiens MA0504.2
BP000984.1 NR2C2 ENCSR000EVS HepG2 Homo sapiens MA0504.2
BP000985.1 NR2C2 ENCSR000EWH K562 Homo sapiens MA0504.2
BP000986.1 NR2C2 ENCSR454GVT WTC11 Homo sapiens MA0504.2
BP000987.1 NR2C2 ENCSR516SWI K562 Homo sapiens MA0504.2
BP000988.1 NR2C2 ENCSR559ZKI HepG2 Homo sapiens MA0504.2
BP000989.1 NR2C2 ENCSR750LYM K562 Homo sapiens MA0504.2
Showing 7 profiles of page 1 from 1 pages
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