Detailed information of deep learning profile BP000958.1

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This page shows detailed deep learning-derived predictions and motifs for EGR1 in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000958.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR000BRZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.01 0.05 0.00 0.07 0.05 0.05 0.01 0.07 -0.00 0.02 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 -0.00 -0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.02 -0.00 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 1455 1324 1275 1215 1267 1149 1726 1259 1382 1104 1138 1648 1356 1315 1182 990 1810 958 1198 127 1797 1 3 14 4126 0 1232 212 2270 1106 1144 977 1053 1065 1142 1257 1240 1866 1936 1895 1299 1217 1288 1189 1351 1351 1339 1286 1873 1241 ]
C [ 3097 2537 3215 3121 2723 2868 2717 3137 3163 3043 3487 2888 3036 2757 2460 2626 3339 2973 5921 7404 4 7799 7772 7247 3622 7794 1019 5388 2841 2884 2579 3536 3441 2708 3379 3204 3249 2656 2525 2633 2419 2483 2443 3122 2385 2443 2394 2445 2405 2501 ]
G [ 1930 2015 2052 1964 1965 2469 1934 2048 1969 1971 1748 1851 2080 2378 2236 2869 1203 1350 362 72 5208 9 15 13 40 4 4341 759 1459 2193 2414 1970 2018 1975 1936 1940 1974 1958 2063 1940 2624 2085 2738 2026 2072 2663 2697 2708 2129 2039 ]
T [ 1328 1934 1268 1510 1855 1324 1433 1366 1296 1692 1437 1423 1338 1360 1932 1325 1458 2529 329 207 801 1 20 536 22 12 1218 1451 1240 1627 1673 1327 1298 2062 1353 1409 1347 1330 1286 1342 1468 2025 1341 1473 2002 1353 1380 1371 1403 2029 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 0.01 -0.02 0.01 -0.04 -0.03 -0.03 0.03 -0.04 -0.00 -0.02 0.01 -0.00 -0.00 -0.00 ]
C [ 0.01 0.00 0.01 0.02 0.05 -0.04 0.07 0.05 0.05 0.02 0.07 -0.02 0.03 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 -0.02 0.05 -0.02 -0.00 -0.03 -0.01 -0.02 0.04 -0.00 0.01 0.00 0.01 0.00 ]
T [ -0.00 0.00 0.01 -0.02 -0.01 -0.01 -0.03 -0.02 0.01 -0.04 -0.02 -0.01 -0.00 -0.01 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2220

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 205

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 79

CWM

PFM

     

HCWM

11 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000954.1 EGR1 ENCSR000BJA H1 Homo sapiens MA0162.5
BP000955.1 EGR1 ENCSR000BMQ GM12878 Homo sapiens MA0162.5
BP000956.1 EGR1 ENCSR000BNE K562 Homo sapiens MA0162.5
BP000957.1 EGR1 ENCSR000BRG GM12878 Homo sapiens MA0162.5
BP000959.1 EGR1 ENCSR000BSQ Ishikawa Homo sapiens MA0162.5
BP000960.1 EGR1 ENCSR000BUX MCF-7 Homo sapiens MA0162.5
BP000961.1 EGR1 ENCSR024CNP K562 Homo sapiens MA0162.5
BP000962.1 EGR1 ENCSR026GSW HepG2 Homo sapiens MA0162.5
BP000963.1 EGR1 ENCSR211LTF K562 Homo sapiens MA0162.5
BP000964.1 EGR1 ENCSR290ZOS liver Homo sapiens MA0162.5
Showing 10 profiles of page 1 from 2 pages