Detailed information of deep learning profile BP000960.1

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This page shows detailed deep learning-derived predictions and motifs for EGR1 in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000960.1
Cell line/tissue: MCF-7
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR000BUX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.01 0.04 0.00 0.07 0.05 0.04 0.00 0.07 0.00 0.03 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 -0.00 -0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.02 -0.00 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 1367 1324 1411 1318 1300 1229 1400 1314 1381 1189 1276 1155 1261 1238 1459 1060 1333 1059 1309 177 1741 3 13 36 4210 6 1409 233 2566 1045 1284 1058 1103 1106 1268 1328 1349 1350 1455 1415 1350 1283 1350 1294 1429 1307 1427 1279 1462 1261 ]
C [ 2628 2624 2611 2747 2629 2707 2690 2766 2635 2933 2855 2937 2947 2960 2510 2925 3264 2858 5305 6865 24 7420 7364 6736 3058 7416 419 5533 2195 2843 2548 2929 2944 2754 2890 2723 2744 2698 2551 2582 2536 2566 2540 2666 2438 2571 2515 2568 2488 2550 ]
G [ 2002 2061 2085 2036 2053 2086 1965 1972 2056 2018 1883 1958 1841 1803 2130 2082 1257 1534 384 110 4745 17 27 33 132 17 4530 877 1560 1979 1853 2145 2103 2151 1961 2040 1979 2043 2103 2018 2126 2164 2146 2028 2092 2157 2127 2146 2119 2152 ]
T [ 1450 1438 1340 1346 1465 1425 1392 1395 1375 1307 1433 1397 1398 1446 1348 1380 1593 1996 449 295 937 7 43 642 47 8 1089 804 1126 1580 1762 1315 1297 1436 1328 1356 1375 1356 1338 1432 1435 1434 1411 1459 1488 1412 1378 1454 1378 1484 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 0.01 -0.02 0.01 -0.03 -0.03 -0.04 0.02 -0.04 -0.00 -0.03 0.01 -0.00 -0.00 -0.01 ]
C [ 0.01 0.01 0.01 0.02 0.05 -0.03 0.07 0.05 0.04 0.02 0.07 -0.02 0.03 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 -0.01 0.04 -0.02 -0.00 -0.02 -0.00 -0.02 0.04 -0.00 0.01 0.00 0.01 0.01 ]
T [ -0.00 -0.00 0.01 -0.01 -0.01 -0.01 -0.03 -0.03 0.01 -0.04 -0.02 -0.01 -0.00 -0.01 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 679

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 28

CWM

PFM

     

HCWM

11 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000954.1 EGR1 ENCSR000BJA H1 Homo sapiens MA0162.5
BP000955.1 EGR1 ENCSR000BMQ GM12878 Homo sapiens MA0162.5
BP000956.1 EGR1 ENCSR000BNE K562 Homo sapiens MA0162.5
BP000957.1 EGR1 ENCSR000BRG GM12878 Homo sapiens MA0162.5
BP000958.1 EGR1 ENCSR000BRZ HCT116 Homo sapiens MA0162.5
BP000959.1 EGR1 ENCSR000BSQ Ishikawa Homo sapiens MA0162.5
BP000961.1 EGR1 ENCSR024CNP K562 Homo sapiens MA0162.5
BP000962.1 EGR1 ENCSR026GSW HepG2 Homo sapiens MA0162.5
BP000963.1 EGR1 ENCSR211LTF K562 Homo sapiens MA0162.5
BP000964.1 EGR1 ENCSR290ZOS liver Homo sapiens MA0162.5
Showing 10 profiles of page 1 from 2 pages