Detailed information of deep learning profile BP000963.1

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This page shows detailed deep learning-derived predictions and motifs for EGR1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000963.1
Cell line/tissue: K562
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR211LTF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 -0.00 0.02 0.00 0.00 0.00 0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.02 0.00 0.06 0.01 0.04 0.05 0.06 0.00 0.04 0.01 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 4897 5115 3286 3171 3299 3356 5001 3387 3305 5092 3497 3201 3112 3165 3238 3210 3066 5085 3122 3159 4016 3536 2836 3745 2755 28 82 1193 23 1 3155 661 915 5798 3186 3126 4803 3050 3074 3642 3279 4158 2987 3237 3805 3140 4136 3886 3171 4716 ]
C [ 4216 3916 4023 5633 5565 5592 3968 3917 5637 3967 5524 3846 3978 3838 3728 3737 3783 3576 3806 3599 4906 4800 2717 2045 7746 9 179 16 26 2 9136 317 736 3057 2291 5334 3749 5226 4082 3932 3429 3759 4006 4449 3803 4902 3943 3860 3921 3991 ]
G [ 5167 5307 5171 5374 5304 5321 5076 7298 5441 5530 5201 5835 5369 5746 7222 7704 7690 6161 7662 8316 5623 6246 6397 10894 2921 17399 7574 16203 17348 17433 177 15924 12720 6302 6988 6705 5886 6153 6977 6066 7846 6825 6538 7031 5666 6527 6176 6842 7227 5473 ]
T [ 3160 3102 4960 3262 3272 3171 3395 2838 3057 2851 3218 4558 4981 4691 3252 2789 2901 2618 2850 2366 2895 2858 5490 756 4018 4 9605 28 43 4 4972 538 3069 2283 4975 2275 3002 3011 3307 3800 2886 2698 3909 2723 4166 2871 3185 2852 3121 3260 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.00 -0.01 -0.01 -0.03 0.01 -0.02 -0.02 -0.01 -0.01 -0.01 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.01 -0.00 0.03 -0.02 -0.01 -0.02 -0.01 -0.02 0.03 -0.01 -0.00 0.00 0.00 0.00 ]
G [ 0.01 0.00 0.01 0.00 0.03 -0.00 0.06 0.02 0.04 0.05 0.06 -0.02 0.04 0.02 0.01 0.01 0.01 ]
T [ -0.00 -0.00 -0.00 0.01 -0.01 -0.00 -0.03 0.03 -0.03 -0.02 -0.02 0.01 -0.01 0.01 -0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3099

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2730

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 381

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 263

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 26

CWM

PFM

     

HCWM

11 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000954.1 EGR1 ENCSR000BJA H1 Homo sapiens MA0162.5
BP000955.1 EGR1 ENCSR000BMQ GM12878 Homo sapiens MA0162.5
BP000956.1 EGR1 ENCSR000BNE K562 Homo sapiens MA0162.5
BP000957.1 EGR1 ENCSR000BRG GM12878 Homo sapiens MA0162.5
BP000958.1 EGR1 ENCSR000BRZ HCT116 Homo sapiens MA0162.5
BP000959.1 EGR1 ENCSR000BSQ Ishikawa Homo sapiens MA0162.5
BP000960.1 EGR1 ENCSR000BUX MCF-7 Homo sapiens MA0162.5
BP000961.1 EGR1 ENCSR024CNP K562 Homo sapiens MA0162.5
BP000962.1 EGR1 ENCSR026GSW HepG2 Homo sapiens MA0162.5
BP000964.1 EGR1 ENCSR290ZOS liver Homo sapiens MA0162.5
Showing 10 profiles of page 1 from 2 pages