Detailed information of deep learning profile BP000954.1

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This page shows detailed deep learning-derived predictions and motifs for EGR1 in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000954.1
Cell line/tissue: H1
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR000BJA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.00 0.03 0.00 -0.00 0.00 -0.00 0.00 0.03 0.00 -0.00 -0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 0.02 -0.00 0.05 0.01 0.03 0.04 0.04 0.00 0.04 0.01 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.01 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 611 587 568 595 597 590 638 568 589 580 580 558 590 568 580 582 562 526 619 763 698 454 219 376 0 0 149 18 2 285 20 134 823 687 633 560 569 598 551 599 535 548 574 560 610 588 606 541 616 580 ]
C [ 1022 990 1032 1023 1052 1042 920 1006 1060 1015 972 1047 969 975 1020 891 943 944 914 818 811 663 194 2594 0 2 0 1 8 2600 6 110 693 534 1010 1085 905 882 941 837 995 1002 937 965 988 1027 979 986 986 1014 ]
G [ 1210 1228 1216 1215 1231 1168 1298 1244 1214 1218 1244 1249 1256 1322 1261 1406 1481 1498 1471 1331 1450 1099 2929 66 3381 2159 3227 3363 3368 7 3344 2723 1463 1725 1319 1251 1445 1428 1457 1505 1392 1288 1356 1363 1307 1265 1284 1293 1248 1245 ]
T [ 539 577 566 549 502 582 526 564 519 569 586 528 567 517 521 503 396 414 378 470 423 1166 40 346 1 1221 6 0 4 490 12 415 403 436 420 486 463 474 433 441 460 544 515 494 477 502 513 562 532 543 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.01 -0.00 0.00 -0.00 -0.02 -0.03 0.01 -0.01 -0.02 -0.01 -0.01 -0.00 0.01 0.00 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 -0.00 0.03 -0.01 -0.01 -0.02 0.00 -0.01 0.03 -0.01 -0.01 -0.00 0.00 0.00 ]
G [ 0.01 0.00 0.01 -0.00 0.02 -0.01 0.05 0.02 0.03 0.04 0.04 -0.02 0.04 0.01 0.01 0.00 0.01 ]
T [ -0.00 -0.00 0.00 0.01 -0.02 -0.01 -0.03 0.02 -0.02 -0.02 -0.02 -0.00 -0.01 0.01 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 610

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 359

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 331

CWM

PFM

     

HCWM

11 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000955.1 EGR1 ENCSR000BMQ GM12878 Homo sapiens MA0162.5
BP000956.1 EGR1 ENCSR000BNE K562 Homo sapiens MA0162.5
BP000957.1 EGR1 ENCSR000BRG GM12878 Homo sapiens MA0162.5
BP000958.1 EGR1 ENCSR000BRZ HCT116 Homo sapiens MA0162.5
BP000959.1 EGR1 ENCSR000BSQ Ishikawa Homo sapiens MA0162.5
BP000960.1 EGR1 ENCSR000BUX MCF-7 Homo sapiens MA0162.5
BP000961.1 EGR1 ENCSR024CNP K562 Homo sapiens MA0162.5
BP000962.1 EGR1 ENCSR026GSW HepG2 Homo sapiens MA0162.5
BP000963.1 EGR1 ENCSR211LTF K562 Homo sapiens MA0162.5
BP000964.1 EGR1 ENCSR290ZOS liver Homo sapiens MA0162.5
Showing 10 profiles of page 1 from 2 pages