Detailed information of deep learning profile BP000956.1

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This page shows detailed deep learning-derived predictions and motifs for EGR1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000956.1
Cell line/tissue: K562
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR000BNE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.02 0.06 0.00 0.11 0.09 0.07 0.01 0.10 0.00 0.04 0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.00 0.00 0.00 -0.00 -0.00 0.02 -0.00 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 3962 3707 3533 3738 3638 4491 3448 4271 3341 3467 4169 4011 3471 3801 3030 5252 2820 3712 649 6220 13 26 80 10959 20 4824 960 6875 3524 3476 2783 3338 3231 3411 3473 3884 4916 5135 4775 3909 3626 3705 3566 4065 3879 3892 3958 5170 3674 3852 ]
C [ 5868 7160 7104 6541 6469 5940 7103 6945 7029 7797 6698 7193 6733 6230 6999 7289 7016 13390 17363 216 19125 19018 18017 7822 19049 2801 12242 6038 6437 5831 8362 7843 6460 7547 7542 7124 6077 5782 6173 5498 5957 5904 7293 5531 5714 5661 5548 5487 5694 5637 ]
G [ 4391 4448 4346 4206 5245 4534 4670 4362 4159 3914 4355 4381 5346 4275 5272 2736 3406 960 322 9146 16 29 43 218 24 7974 2260 2946 4857 4874 4225 4371 4192 4375 4241 4342 4329 4407 4293 5571 4434 5612 4283 4348 5598 5595 5737 4529 4472 4499 ]
T [ 4939 3845 4177 4675 3808 4195 3939 3582 4631 3982 3938 3575 3610 4854 3859 3883 5918 1098 826 3578 6 87 1020 161 67 3561 3698 3301 4342 4979 3790 3608 5277 3827 3904 3810 3838 3836 3919 4182 5143 3939 4018 5216 3969 4012 3917 3974 5320 5172 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.00 0.02 -0.02 0.01 -0.04 -0.03 -0.04 0.04 -0.05 -0.00 -0.03 0.01 -0.01 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.01 0.03 0.07 -0.02 0.11 0.09 0.08 0.05 0.10 -0.00 0.05 0.01 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.00 -0.01 0.05 -0.03 -0.00 -0.03 -0.01 -0.03 0.05 -0.00 0.01 0.00 0.01 0.01 ]
T [ -0.00 -0.00 -0.00 0.01 -0.02 -0.01 -0.01 -0.04 -0.05 0.01 -0.06 -0.02 -0.01 -0.00 -0.01 0.01 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1947

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1870

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 564

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 39

CWM

PFM

     

HCWM

11 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000954.1 EGR1 ENCSR000BJA H1 Homo sapiens MA0162.5
BP000955.1 EGR1 ENCSR000BMQ GM12878 Homo sapiens MA0162.5
BP000957.1 EGR1 ENCSR000BRG GM12878 Homo sapiens MA0162.5
BP000958.1 EGR1 ENCSR000BRZ HCT116 Homo sapiens MA0162.5
BP000959.1 EGR1 ENCSR000BSQ Ishikawa Homo sapiens MA0162.5
BP000960.1 EGR1 ENCSR000BUX MCF-7 Homo sapiens MA0162.5
BP000961.1 EGR1 ENCSR024CNP K562 Homo sapiens MA0162.5
BP000962.1 EGR1 ENCSR026GSW HepG2 Homo sapiens MA0162.5
BP000963.1 EGR1 ENCSR211LTF K562 Homo sapiens MA0162.5
BP000964.1 EGR1 ENCSR290ZOS liver Homo sapiens MA0162.5
Showing 10 profiles of page 1 from 2 pages