Detailed information of deep learning profile BP000964.1

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This page shows detailed deep learning-derived predictions and motifs for EGR1 in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000964.1
Cell line/tissue: liver
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR290ZOS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.00 -0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.03 -0.00 -0.00 -0.00 -0.00 -0.00 ]
G [ -0.00 -0.00 0.00 -0.00 0.03 -0.00 0.07 0.01 0.05 0.05 0.07 -0.00 0.05 0.02 0.00 -0.00 0.00 ]
T [ 0.00 -0.00 0.00 0.01 -0.00 -0.00 0.00 0.02 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 494 457 481 495 505 517 489 495 486 496 538 479 542 671 553 381 188 407 1 4 88 4 0 330 63 112 727 597 495 476 471 464 483 506 467 502 498 443 479 549 513 484 547 513 518 462 505 489 481 495 ]
C [ 687 737 709 750 712 702 663 688 682 673 712 677 652 565 631 425 118 1727 5 6 0 0 1 1617 4 58 479 392 679 725 583 589 610 576 664 703 649 667 688 689 675 697 677 694 698 682 694 662 648 681 ]
G [ 908 867 880 846 870 826 919 889 896 945 889 991 982 868 990 720 2200 63 2532 1240 2448 2532 2537 4 2445 1960 1007 1118 1000 846 990 1042 1077 1040 1000 882 950 953 953 835 906 880 872 857 850 879 837 877 911 868 ]
T [ 449 477 468 447 451 493 467 466 474 424 399 391 362 434 364 1012 32 341 0 1288 2 2 0 587 26 408 325 431 364 491 494 443 368 416 407 451 441 475 418 465 444 477 442 474 472 515 502 510 498 494 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 -0.00 0.01 -0.00 -0.03 -0.05 0.01 -0.03 -0.02 -0.01 -0.00 -0.00 0.02 0.01 0.01 0.00 ]
C [ 0.01 0.00 0.00 0.01 -0.01 0.05 -0.03 -0.01 -0.04 -0.01 -0.03 0.04 -0.03 -0.02 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.01 0.03 -0.03 0.07 0.02 0.05 0.05 0.07 -0.03 0.05 0.02 0.00 0.00 0.01 0.01 ]
T [ 0.00 0.00 0.00 0.02 -0.03 -0.00 -0.03 0.03 -0.04 -0.03 -0.03 0.01 -0.02 0.01 0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1264

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 145

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 32

CWM

PFM

     

HCWM

11 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000954.1 EGR1 ENCSR000BJA H1 Homo sapiens MA0162.5
BP000955.1 EGR1 ENCSR000BMQ GM12878 Homo sapiens MA0162.5
BP000956.1 EGR1 ENCSR000BNE K562 Homo sapiens MA0162.5
BP000957.1 EGR1 ENCSR000BRG GM12878 Homo sapiens MA0162.5
BP000958.1 EGR1 ENCSR000BRZ HCT116 Homo sapiens MA0162.5
BP000959.1 EGR1 ENCSR000BSQ Ishikawa Homo sapiens MA0162.5
BP000960.1 EGR1 ENCSR000BUX MCF-7 Homo sapiens MA0162.5
BP000961.1 EGR1 ENCSR024CNP K562 Homo sapiens MA0162.5
BP000962.1 EGR1 ENCSR026GSW HepG2 Homo sapiens MA0162.5
BP000963.1 EGR1 ENCSR211LTF K562 Homo sapiens MA0162.5
Showing 10 profiles of page 1 from 2 pages