Detailed information of deep learning profile BP000958.1

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This page shows detailed deep learning-derived predictions and motifs for EGR1 in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000958.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR000BRZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 -0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.03 -0.00 -0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.02 -0.00 0.07 0.01 0.05 0.05 0.07 0.00 0.05 0.01 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 2029 1403 1371 1380 1353 2002 1473 1341 2025 1468 1342 1286 1330 1347 1409 1353 2062 1298 1327 1673 1627 1240 1451 1218 12 22 536 20 1 801 207 329 2529 1458 1325 1932 1360 1338 1423 1437 1692 1296 1366 1433 1324 1855 1510 1268 1934 1328 ]
C [ 2039 2129 2708 2697 2663 2072 2026 2738 2085 2624 1940 2063 1958 1974 1940 1936 1975 2018 1970 2414 2193 1459 759 4341 4 40 13 15 9 5208 72 362 1350 1203 2869 2236 2378 2080 1851 1748 1971 1969 2048 1934 2469 1965 1964 2052 2015 1930 ]
G [ 2501 2405 2445 2394 2443 2385 3122 2443 2483 2419 2633 2525 2656 3249 3204 3379 2708 3441 3536 2579 2884 2841 5388 1019 7794 3622 7247 7772 7799 4 7404 5921 2973 3339 2626 2460 2757 3036 2888 3487 3043 3163 3137 2717 2868 2723 3121 3215 2537 3097 ]
T [ 1241 1873 1286 1339 1351 1351 1189 1288 1217 1299 1895 1936 1866 1240 1257 1142 1065 1053 977 1144 1106 2270 212 1232 0 4126 14 3 1 1797 127 1198 958 1810 990 1182 1315 1356 1648 1138 1104 1382 1259 1726 1149 1267 1215 1275 1324 1455 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.01 -0.00 -0.01 -0.02 -0.04 0.01 -0.02 -0.03 -0.01 -0.01 -0.02 0.01 0.00 -0.00 ]
C [ 0.00 0.01 0.00 0.01 -0.00 0.04 -0.02 -0.01 -0.03 -0.00 -0.02 0.05 -0.02 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.00 0.03 -0.02 0.07 0.02 0.05 0.05 0.07 -0.04 0.05 0.02 0.01 0.00 0.01 ]
T [ -0.00 -0.00 -0.00 0.01 -0.02 -0.00 -0.04 0.03 -0.03 -0.03 -0.04 0.01 -0.02 0.01 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2220

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 205

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 79

CWM

PFM

     

HCWM

11 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000954.1 EGR1 ENCSR000BJA H1 Homo sapiens MA0162.5
BP000955.1 EGR1 ENCSR000BMQ GM12878 Homo sapiens MA0162.5
BP000956.1 EGR1 ENCSR000BNE K562 Homo sapiens MA0162.5
BP000957.1 EGR1 ENCSR000BRG GM12878 Homo sapiens MA0162.5
BP000959.1 EGR1 ENCSR000BSQ Ishikawa Homo sapiens MA0162.5
BP000960.1 EGR1 ENCSR000BUX MCF-7 Homo sapiens MA0162.5
BP000961.1 EGR1 ENCSR024CNP K562 Homo sapiens MA0162.5
BP000962.1 EGR1 ENCSR026GSW HepG2 Homo sapiens MA0162.5
BP000963.1 EGR1 ENCSR211LTF K562 Homo sapiens MA0162.5
BP000964.1 EGR1 ENCSR290ZOS liver Homo sapiens MA0162.5
Showing 10 profiles of page 1 from 2 pages