Detailed information of deep learning profile BP000845.1

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This page shows detailed deep learning-derived predictions and motifs for ATF3 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ATF3
Model ID: BP000845.1
Cell line/tissue: K562
Class: Basic leucine zipper factors (bZIP)
Family: Fos-related
JASPAR ID: MA0605.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18847  
Source: ENCSR632DCH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 -0.00 0.04 0.00 0.00 0.09 -0.00 0.01 -0.00 0.00 0.10 -0.00 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 0.00 0.08 -0.00 0.00 0.09 0.00 0.01 0.02 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.02 0.01 0.00 0.09 0.00 0.00 0.02 -0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.00 0.12 0.00 0.00 0.00 -0.00 0.09 -0.00 0.00 0.03 -0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 1312 1405 1364 1275 1384 1417 1263 1277 1262 1236 1281 1322 1431 1314 1402 1563 1277 1056 3413 0 23 4739 32 2616 39 129 4791 82 690 1332 1142 1272 1289 1245 1165 1204 1453 1479 1310 1334 1412 1367 1371 1228 1239 1275 1220 1351 1485 1410 ]
C [ 1062 1075 1067 1139 1161 992 1133 1144 1157 1148 1146 1205 1091 1199 1147 1050 891 551 323 2 12 0 4311 1023 17 4667 10 1317 2293 1290 1234 1123 1118 1234 1163 1123 1068 1052 999 1080 1162 1110 1138 1174 1233 1095 1165 1157 978 1109 ]
G [ 1161 1137 1137 1096 1018 1153 1163 1089 1129 1010 1098 1101 1069 1072 1199 1170 1163 2467 1067 0 4756 7 367 983 3 15 14 524 512 836 906 1035 1112 990 1067 1087 1063 1028 1115 1066 970 1045 1003 1023 1022 1071 1092 1066 1067 1050 ]
T [ 1289 1207 1256 1314 1261 1262 1265 1314 1276 1430 1299 1196 1233 1239 1076 1041 1493 750 21 4822 33 78 114 202 4765 13 9 2901 1329 1366 1542 1394 1305 1355 1429 1410 1240 1265 1400 1344 1280 1302 1312 1399 1330 1383 1347 1250 1294 1255 ]

Hypothetical CWM

   
A [ 0.00 0.01 -0.00 -0.00 0.06 -0.06 -0.07 0.09 -0.05 0.02 -0.01 0.05 0.10 -0.06 -0.00 0.00 -0.01 -0.00 ]
C [ 0.01 0.01 0.01 -0.00 -0.00 0.00 -0.06 -0.08 0.09 -0.01 0.00 0.10 -0.06 0.03 0.04 0.01 0.02 0.01 ]
G [ 0.01 0.02 0.01 0.04 0.03 -0.07 0.09 0.01 0.00 0.10 -0.06 -0.06 0.00 0.00 -0.00 0.01 0.01 0.01 ]
T [ -0.00 -0.01 0.01 0.00 -0.06 0.12 0.06 0.00 0.02 -0.05 0.09 -0.07 -0.06 0.05 0.00 -0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 11601

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 10937

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1696

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 203

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 81

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 41

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 35

CWM

PFM

     

HCWM

10 profiles found for the same TF (ATF3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000835.1 ATF3 ENCSR000BJY GM12878 Homo sapiens MA0605.3
BP000836.1 ATF3 ENCSR000BKC H1 Homo sapiens MA0605.3
BP000837.1 ATF3 ENCSR000BKE HepG2 Homo sapiens MA0605.3
BP000838.1 ATF3 ENCSR000BNU K562 Homo sapiens MA0605.3
BP000839.1 ATF3 ENCSR000BUG HCT116 Homo sapiens MA0605.3
BP000840.1 ATF3 ENCSR000DOG K562 Homo sapiens MA0605.3
BP000841.1 ATF3 ENCSR028UIU K562 Homo sapiens MA0605.3
BP000842.1 ATF3 ENCSR205FOW liver Homo sapiens MA0605.3
BP000843.1 ATF3 ENCSR402ZCY HepG2 Homo sapiens MA0605.3
BP000844.1 ATF3 ENCSR568ZXG K562 Homo sapiens MA0605.3
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