Detailed information of deep learning profile BP000843.1

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This page shows detailed deep learning-derived predictions and motifs for ATF3 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ATF3
Model ID: BP000843.1
Cell line/tissue: HepG2
Class: Basic leucine zipper factors (bZIP)
Family: Fos-related
JASPAR ID: MA0605.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18847  
Source: ENCSR402ZCY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.01 0.00 -0.00 0.04 -0.00 0.00 -0.00 0.00 0.05 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.03 -0.00 0.00 0.04 -0.00 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.00 0.00 0.04 0.00 0.00 0.01 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 0.06 0.00 0.00 -0.00 -0.00 0.04 -0.00 -0.00 0.01 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 325 302 299 295 281 314 272 314 315 350 260 283 286 265 299 298 328 321 298 265 649 0 2 1266 5 465 32 47 1290 18 121 229 265 233 293 320 338 285 356 374 268 260 258 315 273 288 286 325 279 274 ]
C [ 360 335 377 351 337 360 350 320 401 336 322 371 392 378 319 377 346 342 361 131 170 1 2 0 1141 422 12 1248 2 413 740 482 416 373 374 355 315 329 332 343 322 355 394 365 372 371 357 334 354 377 ]
G [ 341 365 347 368 364 330 375 382 331 361 348 336 347 347 368 378 356 414 359 786 462 1 1285 4 81 344 3 1 2 260 191 338 300 357 330 344 399 430 328 309 339 400 320 327 353 352 356 356 361 359 ]
T [ 271 295 274 283 315 293 300 281 250 250 367 307 272 307 311 244 267 220 279 115 16 1295 8 27 70 66 1250 1 3 606 245 248 316 334 300 278 245 253 281 271 368 282 325 290 299 286 298 282 303 287 ]

Hypothetical CWM

   
A [ -0.00 0.00 -0.00 0.00 0.02 -0.03 -0.03 0.04 -0.01 0.01 0.01 0.03 0.05 -0.03 -0.00 -0.00 -0.01 -0.00 ]
C [ 0.01 0.01 0.01 0.00 0.01 0.00 -0.03 -0.03 0.03 0.00 -0.00 0.04 -0.02 0.02 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.02 -0.02 0.04 0.00 0.01 0.04 -0.03 -0.03 0.00 0.01 0.00 0.01 0.01 0.01 ]
T [ -0.00 -0.01 -0.00 -0.00 -0.03 0.06 0.03 0.01 0.01 -0.01 0.04 -0.02 -0.03 0.02 -0.00 -0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 4011

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2242

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1169

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 731

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 619

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 315

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 252

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 159

CWM

PFM

     

HCWM

10 profiles found for the same TF (ATF3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000835.1 ATF3 ENCSR000BJY GM12878 Homo sapiens MA0605.3
BP000836.1 ATF3 ENCSR000BKC H1 Homo sapiens MA0605.3
BP000837.1 ATF3 ENCSR000BKE HepG2 Homo sapiens MA0605.3
BP000838.1 ATF3 ENCSR000BNU K562 Homo sapiens MA0605.3
BP000839.1 ATF3 ENCSR000BUG HCT116 Homo sapiens MA0605.3
BP000840.1 ATF3 ENCSR000DOG K562 Homo sapiens MA0605.3
BP000841.1 ATF3 ENCSR028UIU K562 Homo sapiens MA0605.3
BP000842.1 ATF3 ENCSR205FOW liver Homo sapiens MA0605.3
BP000844.1 ATF3 ENCSR568ZXG K562 Homo sapiens MA0605.3
BP000845.1 ATF3 ENCSR632DCH K562 Homo sapiens MA0605.3
Showing 10 profiles of page 1 from 1 pages
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