Detailed information of deep learning profile BP000842.1

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This page shows detailed deep learning-derived predictions and motifs for ATF3 in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ATF3
Model ID: BP000842.1
Cell line/tissue: liver
Class: Basic leucine zipper factors (bZIP)
Family: Fos-related
JASPAR ID: MA0605.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18847  
Source: ENCSR205FOW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.01 0.00 0.00 0.02 -0.00 0.01 0.00 0.00 0.04 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.03 -0.00 0.00 0.03 0.00 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 -0.00 0.04 0.00 0.00 -0.00 -0.00 0.03 0.00 0.00 0.01 0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 149 128 128 129 160 132 156 157 163 149 158 155 122 155 149 156 171 131 122 283 0 0 455 2 390 0 1 575 0 40 130 101 105 139 106 136 138 162 150 129 133 125 145 135 146 141 150 132 151 156 ]
C [ 151 175 144 141 123 124 128 133 152 147 141 135 165 141 174 152 144 154 66 81 0 0 0 542 76 0 574 0 183 383 195 142 181 138 180 144 131 119 136 151 136 168 152 152 146 157 119 162 159 122 ]
G [ 137 134 160 173 150 155 133 156 132 142 131 144 153 142 150 138 161 142 276 210 0 574 8 27 107 0 0 0 63 50 132 133 136 144 152 153 177 165 145 135 152 140 133 137 127 140 160 138 130 154 ]
T [ 138 138 143 132 142 164 158 129 128 137 145 141 135 137 102 129 99 148 111 1 575 1 112 4 2 575 0 0 329 102 118 199 153 154 137 142 129 129 144 160 154 142 145 151 156 137 146 143 135 143 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.00 -0.00 0.01 -0.02 -0.03 0.02 -0.01 0.01 -0.00 0.02 0.04 -0.02 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.01 -0.00 0.00 -0.01 -0.03 -0.03 0.03 -0.00 0.00 0.03 -0.02 0.01 0.01 0.01 0.00 0.00 ]
G [ 0.00 0.01 0.00 0.01 0.01 -0.02 0.02 0.01 -0.00 0.03 -0.02 -0.02 -0.00 0.01 0.00 0.01 0.01 0.00 ]
T [ -0.00 -0.01 0.00 0.00 -0.02 0.04 0.03 0.01 -0.00 -0.02 0.03 -0.02 -0.02 0.01 0.00 -0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 3911

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2216

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2117

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1782

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 308

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 184

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 138

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 88

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 55

CWM

PFM

     

HCWM

10 profiles found for the same TF (ATF3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000835.1 ATF3 ENCSR000BJY GM12878 Homo sapiens MA0605.3
BP000836.1 ATF3 ENCSR000BKC H1 Homo sapiens MA0605.3
BP000837.1 ATF3 ENCSR000BKE HepG2 Homo sapiens MA0605.3
BP000838.1 ATF3 ENCSR000BNU K562 Homo sapiens MA0605.3
BP000839.1 ATF3 ENCSR000BUG HCT116 Homo sapiens MA0605.3
BP000840.1 ATF3 ENCSR000DOG K562 Homo sapiens MA0605.3
BP000841.1 ATF3 ENCSR028UIU K562 Homo sapiens MA0605.3
BP000843.1 ATF3 ENCSR402ZCY HepG2 Homo sapiens MA0605.3
BP000844.1 ATF3 ENCSR568ZXG K562 Homo sapiens MA0605.3
BP000845.1 ATF3 ENCSR632DCH K562 Homo sapiens MA0605.3
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