Detailed information of deep learning profile BP000841.1

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This page shows detailed deep learning-derived predictions and motifs for ATF3 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ATF3
Model ID: BP000841.1
Cell line/tissue: K562
Class: Basic leucine zipper factors (bZIP)
Family: Fos-related
JASPAR ID: MA0605.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18847  
Source: ENCSR028UIU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 -0.00 0.03 0.00 -0.00 0.08 0.00 0.00 0.00 0.00 0.11 -0.00 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.08 0.00 0.00 0.02 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.02 0.01 0.00 0.08 0.00 -0.00 0.07 -0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.00 0.09 0.00 0.00 0.01 -0.00 0.08 0.00 -0.00 0.04 -0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 1283 1259 1331 1288 1307 1372 1329 1289 1273 1326 1353 1229 1271 1347 1395 1508 1344 1330 1495 1293 1241 2776 51 10 4493 265 129 38 108 4707 38 863 1526 1086 1073 1221 1293 1222 1249 1438 1308 1320 1269 1308 1332 1335 1207 1227 1235 1321 ]
C [ 1039 993 1053 1079 1017 987 993 1058 1012 1044 1075 1000 996 1007 979 934 984 1038 884 846 533 576 34 18 41 755 408 52 4591 2 1007 2249 1098 1145 1104 1005 1041 1063 1093 944 1062 980 1100 1067 1006 1005 1079 1118 1100 1087 ]
G [ 959 1132 1116 1056 1107 1064 1078 1072 1115 1000 962 1051 1016 1103 1086 1102 1132 1088 1184 1206 2224 1232 26 4488 80 1022 4118 3 10 7 321 532 825 999 1056 1165 963 1137 1074 1034 1086 1125 1074 964 1072 1058 1029 981 1040 1018 ]
T [ 1436 1333 1217 1294 1286 1294 1317 1298 1317 1347 1327 1437 1434 1260 1257 1173 1257 1261 1154 1372 719 133 4606 201 103 2675 62 4624 8 1 3351 1073 1268 1487 1484 1326 1420 1295 1301 1301 1261 1292 1274 1378 1307 1319 1402 1391 1342 1291 ]

Hypothetical CWM

   
A [ 0.00 0.01 -0.00 -0.00 0.05 -0.05 -0.05 0.08 -0.04 0.02 0.01 0.05 0.11 -0.05 0.00 0.01 -0.01 -0.00 ]
C [ 0.00 0.00 0.01 -0.00 0.00 0.00 -0.04 -0.05 0.09 0.01 0.01 0.08 -0.05 0.03 0.04 0.01 0.02 0.01 ]
G [ 0.01 0.01 0.01 0.04 0.03 -0.05 0.08 0.01 -0.00 0.08 -0.06 -0.04 0.00 0.00 -0.00 0.01 0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.00 -0.05 0.09 0.04 -0.00 0.02 -0.03 0.08 -0.05 -0.05 0.05 -0.00 -0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 8898

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 8278

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1932

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1305

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 786

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 385

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 238

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 70

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 27

CWM

PFM

     

HCWM

10 profiles found for the same TF (ATF3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000835.1 ATF3 ENCSR000BJY GM12878 Homo sapiens MA0605.3
BP000836.1 ATF3 ENCSR000BKC H1 Homo sapiens MA0605.3
BP000837.1 ATF3 ENCSR000BKE HepG2 Homo sapiens MA0605.3
BP000838.1 ATF3 ENCSR000BNU K562 Homo sapiens MA0605.3
BP000839.1 ATF3 ENCSR000BUG HCT116 Homo sapiens MA0605.3
BP000840.1 ATF3 ENCSR000DOG K562 Homo sapiens MA0605.3
BP000842.1 ATF3 ENCSR205FOW liver Homo sapiens MA0605.3
BP000843.1 ATF3 ENCSR402ZCY HepG2 Homo sapiens MA0605.3
BP000844.1 ATF3 ENCSR568ZXG K562 Homo sapiens MA0605.3
BP000845.1 ATF3 ENCSR632DCH K562 Homo sapiens MA0605.3
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