Detailed information of deep learning profile BP000840.1

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This page shows detailed deep learning-derived predictions and motifs for ATF3 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ATF3
Model ID: BP000840.1
Cell line/tissue: K562
Class: Basic leucine zipper factors (bZIP)
Family: Fos-related
JASPAR ID: MA0605.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18847  
Source: ENCSR000DOG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.01 0.00 0.00 0.02 -0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.01 -0.00 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.00 0.00 0.02 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.01 0.00 0.00 0.04 -0.00 0.00 0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 94 91 102 106 102 94 84 85 105 102 107 85 97 81 65 40 69 24 34 40 58 70 93 97 103 125 292 25 22 429 8 11 36 154 303 71 112 108 112 89 84 84 82 82 85 95 72 94 99 86 ]
C [ 201 181 187 207 198 201 203 227 225 182 200 222 170 204 296 112 81 454 67 432 174 202 197 240 189 75 72 65 59 25 536 8 151 294 84 232 206 185 168 205 190 193 190 231 211 202 227 219 186 196 ]
G [ 178 201 169 186 176 172 174 146 152 190 184 171 208 212 133 380 302 71 436 61 259 211 201 176 112 281 176 34 430 93 12 547 16 89 140 136 161 206 228 181 216 220 232 184 200 187 195 183 195 183 ]
T [ 101 101 116 75 98 107 113 116 92 100 83 96 99 77 80 42 122 25 37 41 83 91 83 61 170 93 34 450 63 27 18 8 371 37 47 135 95 75 66 99 84 77 70 77 78 90 80 78 94 109 ]

Hypothetical CWM

   
A [ -0.00 -0.01 -0.01 -0.00 -0.01 -0.01 -0.00 -0.01 -0.00 -0.01 -0.01 -0.00 -0.01 -0.01 -0.00 -0.01 0.01 -0.02 -0.02 0.02 -0.02 -0.01 -0.01 -0.00 0.01 -0.02 -0.01 -0.01 -0.01 -0.00 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 ]
C [ 0.00 0.00 0.00 -0.00 0.01 -0.00 -0.00 0.02 -0.01 0.01 0.00 -0.00 0.01 0.01 0.00 0.00 -0.01 0.01 0.00 -0.02 0.04 -0.02 0.00 0.01 -0.01 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 ]
G [ -0.00 0.00 0.00 0.00 -0.00 0.01 0.00 -0.01 0.02 -0.01 0.01 0.00 -0.00 0.00 -0.00 0.01 0.01 -0.02 0.01 -0.00 -0.02 0.04 -0.02 0.00 0.00 -0.01 0.00 0.00 0.01 0.00 -0.00 0.01 0.01 0.00 0.01 0.00 ]
T [ -0.01 -0.00 -0.00 -0.00 -0.01 -0.01 -0.00 -0.01 -0.01 -0.01 -0.01 -0.01 -0.00 -0.01 -0.00 -0.01 -0.02 0.02 -0.00 -0.01 -0.01 -0.02 0.02 -0.02 -0.02 0.00 -0.01 -0.01 -0.01 -0.01 -0.00 -0.01 -0.01 -0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 742

CWM

PFM

     

HCWM

10 profiles found for the same TF (ATF3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000835.1 ATF3 ENCSR000BJY GM12878 Homo sapiens MA0605.3
BP000836.1 ATF3 ENCSR000BKC H1 Homo sapiens MA0605.3
BP000837.1 ATF3 ENCSR000BKE HepG2 Homo sapiens MA0605.3
BP000838.1 ATF3 ENCSR000BNU K562 Homo sapiens MA0605.3
BP000839.1 ATF3 ENCSR000BUG HCT116 Homo sapiens MA0605.3
BP000841.1 ATF3 ENCSR028UIU K562 Homo sapiens MA0605.3
BP000842.1 ATF3 ENCSR205FOW liver Homo sapiens MA0605.3
BP000843.1 ATF3 ENCSR402ZCY HepG2 Homo sapiens MA0605.3
BP000844.1 ATF3 ENCSR568ZXG K562 Homo sapiens MA0605.3
BP000845.1 ATF3 ENCSR632DCH K562 Homo sapiens MA0605.3
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