Detailed information of deep learning profile BP000839.1

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This page shows detailed deep learning-derived predictions and motifs for ATF3 in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ATF3
Model ID: BP000839.1
Cell line/tissue: HCT116
Class: Basic leucine zipper factors (bZIP)
Family: Fos-related
JASPAR ID: MA0605.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18847  
Source: ENCSR000BUG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 0.01 0.00 -0.00 0.02 0.00 0.00 -0.00 0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.02 -0.00 0.00 0.02 0.00 0.00 0.01 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.02 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 0.00 0.00 -0.00 -0.00 0.02 0.00 0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 154 155 141 152 155 147 140 165 142 135 141 138 145 153 134 171 113 108 354 1 4 468 16 323 15 40 517 12 64 145 109 121 148 141 147 129 158 180 134 129 137 157 145 159 151 152 142 127 137 135 ]
C [ 120 91 125 135 101 110 155 132 108 115 134 138 116 103 133 114 102 62 61 2 8 3 461 84 7 483 1 145 280 173 143 138 127 114 114 104 117 107 105 128 122 111 115 119 128 115 111 120 136 127 ]
G [ 110 132 133 97 125 129 106 103 109 121 118 118 123 126 126 135 147 285 102 0 462 10 34 65 0 0 4 83 59 91 102 127 122 107 146 148 115 106 106 132 113 134 122 122 101 119 124 115 115 110 ]
T [ 140 146 125 140 143 138 123 124 165 153 131 130 140 142 131 104 162 69 7 521 50 43 13 52 502 1 2 284 121 115 170 138 127 162 117 143 134 131 179 135 152 122 142 124 144 138 147 162 136 152 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.01 -0.00 0.01 -0.02 -0.02 0.02 -0.01 0.00 -0.01 0.01 0.02 -0.02 -0.00 -0.00 -0.01 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.02 -0.02 0.02 -0.01 0.00 0.02 -0.01 0.01 0.01 0.00 0.01 0.00 ]
G [ 0.00 0.00 0.01 0.00 0.01 0.01 -0.01 0.02 0.00 -0.01 0.02 -0.02 -0.02 0.00 0.00 -0.00 0.01 0.00 0.00 ]
T [ -0.00 -0.00 -0.01 0.00 -0.00 -0.02 0.02 0.01 -0.01 -0.00 -0.02 0.02 -0.02 -0.02 0.01 -0.00 -0.01 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2579

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1262

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 286

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 118

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 46

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 26

CWM

PFM

     

HCWM

10 profiles found for the same TF (ATF3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000835.1 ATF3 ENCSR000BJY GM12878 Homo sapiens MA0605.3
BP000836.1 ATF3 ENCSR000BKC H1 Homo sapiens MA0605.3
BP000837.1 ATF3 ENCSR000BKE HepG2 Homo sapiens MA0605.3
BP000838.1 ATF3 ENCSR000BNU K562 Homo sapiens MA0605.3
BP000840.1 ATF3 ENCSR000DOG K562 Homo sapiens MA0605.3
BP000841.1 ATF3 ENCSR028UIU K562 Homo sapiens MA0605.3
BP000842.1 ATF3 ENCSR205FOW liver Homo sapiens MA0605.3
BP000843.1 ATF3 ENCSR402ZCY HepG2 Homo sapiens MA0605.3
BP000844.1 ATF3 ENCSR568ZXG K562 Homo sapiens MA0605.3
BP000845.1 ATF3 ENCSR632DCH K562 Homo sapiens MA0605.3
Showing 10 profiles of page 1 from 1 pages
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