Detailed information of deep learning profile BP000835.1

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This page shows detailed deep learning-derived predictions and motifs for ATF3 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ATF3
Model ID: BP000835.1
Cell line/tissue: GM12878
Class: Basic leucine zipper factors (bZIP)
Family: Fos-related
JASPAR ID: MA0605.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18847  
Source: ENCSR000BJY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.00 0.00 -0.00 0.01 -0.00 0.00 0.00 0.00 0.02 0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.02 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.03 0.00 0.01 0.01 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.01 0.00 0.00 0.04 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 -0.00 0.02 0.00 -0.00 0.01 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.01 0.00 -0.00 0.00 0.00 0.02 -0.00 -0.00 0.01 0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 136 129 108 115 110 95 117 95 111 105 113 115 105 122 165 76 53 434 27 29 50 81 562 65 143 247 120 113 114 98 32 18 21 128 51 112 106 132 159 113 125 132 144 130 131 124 134 139 113 146 ]
C [ 233 247 249 243 217 283 232 299 254 281 247 248 270 224 178 130 89 65 644 31 129 555 55 241 303 134 229 230 195 335 40 646 44 439 548 143 277 266 203 241 256 189 208 223 225 244 226 228 249 218 ]
G [ 234 228 268 287 280 254 299 248 249 233 257 214 220 226 286 98 384 168 28 654 46 52 72 60 104 224 280 241 318 192 617 37 640 95 86 407 227 210 251 262 215 268 260 262 265 235 238 239 260 241 ]
T [ 128 127 106 86 124 99 83 89 117 112 114 154 136 159 102 427 205 64 32 17 506 43 42 365 181 126 102 147 104 106 42 30 26 69 46 69 121 123 118 115 135 142 119 116 110 128 133 125 109 126 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 0.01 -0.01 -0.01 0.02 -0.02 -0.01 -0.00 -0.00 0.02 -0.01 -0.00 0.01 -0.01 -0.00 -0.01 -0.01 -0.00 -0.02 -0.01 -0.00 -0.01 -0.00 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 -0.01 -0.00 -0.01 -0.01 0.04 -0.03 0.00 0.02 -0.02 0.01 0.00 -0.00 0.00 -0.00 0.00 0.01 -0.01 0.03 -0.01 0.01 0.02 -0.01 0.00 0.00 -0.00 -0.00 ]
G [ 0.00 0.00 -0.00 0.00 -0.01 0.01 0.00 -0.03 0.04 -0.02 -0.01 0.00 -0.01 -0.01 -0.00 0.01 0.00 0.00 0.01 0.02 -0.01 0.03 -0.00 -0.01 0.01 -0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.02 0.00 -0.00 -0.00 -0.02 0.02 -0.01 -0.01 0.01 0.00 0.00 -0.00 -0.00 0.00 -0.01 -0.01 -0.01 -0.02 -0.00 -0.01 -0.01 0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2345

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 839

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 614

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 447

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 188

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 168

CWM

PFM

     

HCWM

10 profiles found for the same TF (ATF3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000836.1 ATF3 ENCSR000BKC H1 Homo sapiens MA0605.3
BP000837.1 ATF3 ENCSR000BKE HepG2 Homo sapiens MA0605.3
BP000838.1 ATF3 ENCSR000BNU K562 Homo sapiens MA0605.3
BP000839.1 ATF3 ENCSR000BUG HCT116 Homo sapiens MA0605.3
BP000840.1 ATF3 ENCSR000DOG K562 Homo sapiens MA0605.3
BP000841.1 ATF3 ENCSR028UIU K562 Homo sapiens MA0605.3
BP000842.1 ATF3 ENCSR205FOW liver Homo sapiens MA0605.3
BP000843.1 ATF3 ENCSR402ZCY HepG2 Homo sapiens MA0605.3
BP000844.1 ATF3 ENCSR568ZXG K562 Homo sapiens MA0605.3
BP000845.1 ATF3 ENCSR632DCH K562 Homo sapiens MA0605.3
Showing 10 profiles of page 1 from 1 pages
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