Detailed information of deep learning profile BP000833.1

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This page shows detailed deep learning-derived predictions and motifs for RELA in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RELA
Model ID: BP000833.1
Cell line/tissue: HepG2
Class: Rel homology region (RHR) factors
Family: NF-kappaB-related factors
JASPAR ID: MA0107.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q04206  
Source: ENCSR580HOI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.01 0.01 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 0.00 0.03 0.03 0.01 0.00 0.00 0.00 -0.00 ]
G [ 0.00 0.00 -0.00 0.00 0.02 0.03 0.03 0.01 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.02 0.03 0.01 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 242 223 243 229 244 232 240 252 234 244 239 212 236 236 252 232 314 295 191 219 292 51 11 57 485 490 102 10 18 23 17 261 300 251 257 185 211 198 220 221 235 263 297 241 212 235 237 235 247 206 ]
C [ 290 315 299 297 314 300 311 311 313 303 273 304 269 282 286 307 251 301 330 396 309 70 12 14 46 232 50 11 250 988 1037 589 219 217 280 291 292 322 292 286 302 288 295 292 352 313 302 310 304 320 ]
G [ 313 285 288 312 284 290 293 283 291 278 285 290 312 320 311 336 329 312 335 213 213 797 1022 945 469 154 36 30 11 33 5 89 336 364 327 285 285 303 319 347 278 288 262 262 291 276 305 298 296 302 ]
T [ 224 246 239 231 227 247 225 223 231 244 272 263 252 231 220 194 175 161 213 241 255 151 24 53 69 193 881 1018 790 25 10 130 214 237 205 308 281 246 238 215 254 230 215 274 214 245 225 226 222 241 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 -0.00 -0.01 -0.02 -0.00 0.02 0.02 0.01 -0.01 -0.01 -0.01 -0.01 -0.00 0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.01 0.01 0.01 -0.00 -0.01 -0.02 -0.00 -0.01 -0.01 0.01 0.03 0.03 0.02 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.02 0.03 0.03 0.01 -0.01 -0.01 -0.00 -0.02 -0.01 -0.00 0.00 0.01 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 -0.00 -0.01 -0.01 -0.01 -0.01 0.00 0.02 0.03 0.02 -0.01 -0.02 -0.01 -0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 821

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 642

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 481

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 313

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 289

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 253

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 195

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 159

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 109

CWM

PFM

     

HCWM

9 profiles found for the same TF (RELA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000825.1 RELA ENCSR000EAG GM12878 Homo sapiens MA0107.1
BP000826.1 RELA ENCSR000EAI GM12891 Homo sapiens MA0107.1
BP000827.1 RELA ENCSR000EAN GM12892 Homo sapiens MA0107.1
BP000828.1 RELA ENCSR000EAQ GM15510 Homo sapiens MA0107.1
BP000829.1 RELA ENCSR000EBA GM18526 Homo sapiens MA0107.1
BP000830.1 RELA ENCSR000EBD GM18951 Homo sapiens MA0107.1
BP000831.1 RELA ENCSR000EBI GM19099 Homo sapiens MA0107.1
BP000832.1 RELA ENCSR000EBM GM19193 Homo sapiens MA0107.1
BP000834.1 RELA ENCSR664POU GM12878 Homo sapiens MA0107.1
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