Detailed information of deep learning profile BP000832.1

  1. Home
  2. Deep Learning Profile > BP000832.1
This page shows detailed deep learning-derived predictions and motifs for RELA in GM19193 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RELA
Model ID: BP000832.1
Cell line/tissue: GM19193
Class: Rel homology region (RHR) factors
Family: NF-kappaB-related factors
JASPAR ID: MA0107.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q04206  
Source: ENCSR000EBM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.03 0.07 0.05 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.03 0.07 0.10 0.06 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.02 0.06 0.07 0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 1275 1249 1220 1268 1223 1246 1267 1242 1274 1276 1257 1270 1216 1198 1267 1130 1046 952 719 446 396 3419 4584 4033 820 293 589 45 341 1186 1359 1119 1093 1107 1104 1098 1065 1136 1195 1153 1177 1260 1198 1118 1173 1225 1174 1203 1217 1223 ]
C [ 1140 1220 1231 1244 1246 1290 1209 1166 1187 1148 1189 1203 1255 1242 1176 1388 1510 1366 602 126 39 114 139 137 750 2598 4211 4776 4274 1435 882 1358 1280 1287 1354 1324 1363 1431 1385 1344 1269 1199 1143 1275 1278 1320 1291 1217 1257 1229 ]
G [ 1189 1241 1184 1144 1164 1137 1166 1237 1243 1251 1239 1236 1258 1298 1298 1277 1023 1067 2004 4042 4307 1215 80 136 1279 150 9 8 100 582 1293 1283 1192 1194 1155 1147 1169 1099 1124 1166 1180 1206 1243 1248 1210 1170 1194 1219 1134 1157 ]
T [ 1227 1121 1196 1175 1198 1158 1189 1186 1127 1156 1146 1122 1102 1093 1090 1036 1252 1446 1506 217 89 83 28 525 1982 1790 22 2 116 1628 1297 1071 1266 1243 1218 1262 1234 1165 1127 1168 1205 1166 1247 1190 1170 1116 1172 1192 1223 1222 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.00 -0.01 -0.02 -0.03 -0.01 0.04 0.07 0.05 -0.01 -0.02 0.01 -0.01 -0.02 -0.01 0.00 -0.00 -0.01 ]
C [ 0.01 0.01 0.01 0.01 0.01 -0.02 -0.05 -0.05 -0.02 -0.03 -0.00 0.04 0.08 0.10 0.07 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.03 0.07 0.07 0.02 -0.02 -0.03 -0.01 -0.05 -0.06 -0.03 -0.00 0.01 0.01 0.01 0.01 ]
T [ -0.01 -0.01 -0.00 -0.00 -0.01 -0.02 -0.01 -0.03 -0.04 0.00 0.03 0.03 -0.04 -0.07 -0.04 0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1159

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 788

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 67

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 27

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 24

CWM

PFM

     

HCWM

9 profiles found for the same TF (RELA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000825.1 RELA ENCSR000EAG GM12878 Homo sapiens MA0107.1
BP000826.1 RELA ENCSR000EAI GM12891 Homo sapiens MA0107.1
BP000827.1 RELA ENCSR000EAN GM12892 Homo sapiens MA0107.1
BP000828.1 RELA ENCSR000EAQ GM15510 Homo sapiens MA0107.1
BP000829.1 RELA ENCSR000EBA GM18526 Homo sapiens MA0107.1
BP000830.1 RELA ENCSR000EBD GM18951 Homo sapiens MA0107.1
BP000831.1 RELA ENCSR000EBI GM19099 Homo sapiens MA0107.1
BP000833.1 RELA ENCSR580HOI HepG2 Homo sapiens MA0107.1
BP000834.1 RELA ENCSR664POU GM12878 Homo sapiens MA0107.1
Showing 9 profiles of page 1 from 1 pages
  • 1 (current)