Detailed information of deep learning profile BP000828.1

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This page shows detailed deep learning-derived predictions and motifs for RELA in GM15510 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RELA
Model ID: BP000828.1
Cell line/tissue: GM15510
Class: Rel homology region (RHR) factors
Family: NF-kappaB-related factors
JASPAR ID: MA0107.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q04206  
Source: ENCSR000EAQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.01 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 0.05 0.02 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.04 0.07 0.06 0.02 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 0.05 0.03 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1285 1143 1206 1246 1297 1233 1270 1267 1182 1229 1297 1351 1275 1291 1285 996 1272 1769 156 12 30 1846 2141 597 33 70 51 120 1436 1574 1307 1122 1139 1092 1139 1184 1139 1212 1214 1229 1234 1225 1222 1241 1274 1228 1233 1240 1307 1235 ]
C [ 1254 1249 1324 1334 1316 1297 1318 1272 1199 1197 1213 1170 1233 1299 1280 1492 1488 759 156 15 5 154 1415 228 84 1298 4676 4544 2412 1163 1108 1430 1470 1463 1443 1350 1443 1420 1448 1406 1292 1285 1276 1273 1315 1352 1332 1375 1354 1357 ]
G [ 1423 1496 1379 1361 1320 1390 1353 1407 1525 1583 1508 1508 1520 1454 1401 1502 1009 1334 4409 5112 4569 2903 839 159 114 104 17 91 555 1374 1591 1496 1226 1389 1333 1314 1324 1258 1205 1246 1283 1380 1359 1315 1319 1285 1274 1295 1243 1308 ]
T [ 1202 1276 1255 1223 1231 1244 1223 1218 1258 1155 1146 1135 1136 1120 1198 1174 1395 1302 443 25 560 261 769 4180 4933 3692 420 409 761 1053 1158 1116 1329 1220 1249 1316 1258 1274 1297 1283 1355 1274 1307 1335 1256 1299 1325 1254 1260 1264 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 -0.03 -0.03 -0.03 0.02 0.03 0.01 -0.02 -0.02 -0.01 -0.02 -0.01 -0.00 0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.01 0.01 -0.01 -0.04 -0.02 0.00 -0.02 -0.01 0.02 0.06 0.06 0.03 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.05 0.07 0.06 0.03 0.01 -0.02 -0.01 -0.02 -0.04 -0.01 0.02 0.01 0.01 0.01 0.01 ]
T [ -0.00 -0.00 0.00 -0.01 -0.01 -0.02 0.01 -0.01 -0.00 0.04 0.05 0.03 -0.00 -0.02 -0.02 -0.01 -0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1298

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 828

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 639

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 182

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 65

CWM

PFM

     

HCWM

9 profiles found for the same TF (RELA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000825.1 RELA ENCSR000EAG GM12878 Homo sapiens MA0107.1
BP000826.1 RELA ENCSR000EAI GM12891 Homo sapiens MA0107.1
BP000827.1 RELA ENCSR000EAN GM12892 Homo sapiens MA0107.1
BP000829.1 RELA ENCSR000EBA GM18526 Homo sapiens MA0107.1
BP000830.1 RELA ENCSR000EBD GM18951 Homo sapiens MA0107.1
BP000831.1 RELA ENCSR000EBI GM19099 Homo sapiens MA0107.1
BP000832.1 RELA ENCSR000EBM GM19193 Homo sapiens MA0107.1
BP000833.1 RELA ENCSR580HOI HepG2 Homo sapiens MA0107.1
BP000834.1 RELA ENCSR664POU GM12878 Homo sapiens MA0107.1
Showing 9 profiles of page 1 from 1 pages
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