Detailed information of deep learning profile BP000827.1

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This page shows detailed deep learning-derived predictions and motifs for RELA in GM12892 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RELA
Model ID: BP000827.1
Cell line/tissue: GM12892
Class: Rel homology region (RHR) factors
Family: NF-kappaB-related factors
JASPAR ID: MA0107.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q04206  
Source: ENCSR000EAN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.03 0.05 0.04 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 0.08 0.05 0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.06 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 1256 1180 1221 1276 1159 1228 1193 1171 1235 1187 1154 1202 1214 1120 1244 1197 1128 1192 1038 1028 909 729 255 66 3309 4533 3846 724 290 566 31 366 1258 1333 1160 1088 1083 1050 1082 1065 1092 1192 1193 1179 1212 1177 1132 1149 1138 1143 ]
C [ 1180 1154 1165 1129 1203 1220 1273 1245 1238 1225 1172 1156 1151 1249 1162 1176 1242 1175 1346 1370 1288 508 28 7 102 75 146 745 2539 4145 4701 4114 1106 958 1316 1249 1256 1283 1281 1357 1377 1286 1238 1211 1212 1150 1259 1219 1280 1263 ]
G [ 1177 1216 1246 1187 1230 1148 1127 1136 1154 1176 1228 1246 1276 1265 1214 1323 1327 1323 1290 1106 1149 2055 4344 4616 1208 90 165 1324 150 7 6 128 683 1286 1295 1163 1163 1214 1105 1131 1118 1136 1195 1191 1196 1188 1195 1255 1201 1173 ]
T [ 1129 1192 1110 1150 1150 1146 1149 1190 1115 1154 1188 1138 1101 1108 1122 1046 1045 1052 1068 1238 1396 1450 115 53 123 44 585 1949 1763 24 4 134 1695 1165 971 1242 1240 1195 1274 1189 1155 1128 1116 1161 1122 1227 1156 1119 1123 1163 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.00 -0.00 -0.01 -0.02 -0.00 0.04 0.06 0.04 -0.00 -0.01 0.01 -0.01 -0.01 -0.00 0.01 0.00 0.00 ]
C [ 0.01 0.01 0.01 0.01 0.01 -0.02 -0.05 -0.03 -0.02 -0.02 -0.00 0.04 0.07 0.08 0.05 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.03 0.06 0.06 0.03 -0.01 -0.02 -0.00 -0.04 -0.05 -0.02 0.00 0.01 0.01 0.01 0.01 ]
T [ -0.00 -0.00 0.00 0.00 -0.01 -0.02 -0.01 -0.02 -0.02 0.02 0.03 0.03 -0.02 -0.04 -0.02 0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 646

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 588

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 520

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 386

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 23

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 22

CWM

PFM

     

HCWM

9 profiles found for the same TF (RELA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000825.1 RELA ENCSR000EAG GM12878 Homo sapiens MA0107.1
BP000826.1 RELA ENCSR000EAI GM12891 Homo sapiens MA0107.1
BP000828.1 RELA ENCSR000EAQ GM15510 Homo sapiens MA0107.1
BP000829.1 RELA ENCSR000EBA GM18526 Homo sapiens MA0107.1
BP000830.1 RELA ENCSR000EBD GM18951 Homo sapiens MA0107.1
BP000831.1 RELA ENCSR000EBI GM19099 Homo sapiens MA0107.1
BP000832.1 RELA ENCSR000EBM GM19193 Homo sapiens MA0107.1
BP000833.1 RELA ENCSR580HOI HepG2 Homo sapiens MA0107.1
BP000834.1 RELA ENCSR664POU GM12878 Homo sapiens MA0107.1
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