Detailed information of deep learning profile BP000826.1

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This page shows detailed deep learning-derived predictions and motifs for RELA in GM12891 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RELA
Model ID: BP000826.1
Cell line/tissue: GM12891
Class: Rel homology region (RHR) factors
Family: NF-kappaB-related factors
JASPAR ID: MA0107.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q04206  
Source: ENCSR000EAI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.03 0.06 0.04 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.07 0.10 0.06 0.01 -0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.06 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.02 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 2326 2314 2229 2258 2266 2305 2273 2294 2162 2305 2324 2369 2327 2196 2217 2336 1957 1984 1786 1507 1010 1112 6343 7854 6668 1324 587 991 57 513 2199 2473 2146 2049 2061 2047 2010 1966 1987 2171 2192 2170 2296 2128 2054 2162 2078 2085 2210 2194 ]
C [ 1914 1872 2006 1983 2034 2060 2070 1956 1938 1877 1893 1887 1966 2020 2081 1915 2345 2385 2253 1035 296 85 195 222 256 1216 4484 7358 8349 7575 2301 1532 2168 2170 2219 2211 2232 2314 2411 2299 2203 2072 2060 2037 2132 2084 2226 2184 2152 2097 ]
G [ 2091 2006 2087 1943 1906 1857 1977 1932 2095 2084 2136 2096 2123 2155 2178 2164 2144 1750 1855 3253 6795 7032 1662 213 312 2229 182 16 10 129 827 2019 2205 1978 1941 1920 1878 1889 1823 1843 1893 1950 1995 1993 2016 2025 1987 1924 1958 1886 ]
T [ 2093 2232 2102 2240 2218 2202 2104 2242 2229 2158 2071 2072 2008 2053 1948 2009 1978 2305 2530 2629 323 195 224 135 1188 3655 3171 59 8 207 3097 2400 1905 2227 2203 2246 2304 2255 2203 2111 2136 2232 2073 2266 2222 2153 2133 2231 2104 2247 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.01 -0.02 -0.02 -0.00 0.04 0.07 0.05 -0.00 -0.01 0.01 -0.01 -0.01 -0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.01 0.01 -0.02 -0.05 -0.04 -0.02 -0.03 -0.00 0.04 0.08 0.10 0.07 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.04 0.07 0.07 0.02 -0.01 -0.03 -0.01 -0.05 -0.06 -0.03 -0.00 0.01 0.01 0.01 0.01 ]
T [ 0.00 0.00 0.01 0.00 -0.00 -0.02 -0.02 -0.03 -0.03 0.02 0.03 0.03 -0.03 -0.05 -0.03 0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1174

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1090

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 522

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 252

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 248

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 233

CWM

PFM

     

HCWM

9 profiles found for the same TF (RELA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000825.1 RELA ENCSR000EAG GM12878 Homo sapiens MA0107.1
BP000827.1 RELA ENCSR000EAN GM12892 Homo sapiens MA0107.1
BP000828.1 RELA ENCSR000EAQ GM15510 Homo sapiens MA0107.1
BP000829.1 RELA ENCSR000EBA GM18526 Homo sapiens MA0107.1
BP000830.1 RELA ENCSR000EBD GM18951 Homo sapiens MA0107.1
BP000831.1 RELA ENCSR000EBI GM19099 Homo sapiens MA0107.1
BP000832.1 RELA ENCSR000EBM GM19193 Homo sapiens MA0107.1
BP000833.1 RELA ENCSR580HOI HepG2 Homo sapiens MA0107.1
BP000834.1 RELA ENCSR664POU GM12878 Homo sapiens MA0107.1
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