Detailed information of deep learning profile BP000825.1

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This page shows detailed deep learning-derived predictions and motifs for RELA in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RELA
Model ID: BP000825.1
Cell line/tissue: GM12878
Class: Rel homology region (RHR) factors
Family: NF-kappaB-related factors
JASPAR ID: MA0107.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q04206  
Source: ENCSR000EAG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.01 0.01 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 0.06 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.00 0.06 0.09 0.06 0.02 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.05 0.07 0.04 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1527 1513 1515 1423 1499 1500 1547 1430 1494 1454 1455 1469 1559 1642 1557 1591 1559 1307 1553 2493 43 2 35 2444 1948 159 10 105 68 173 2201 1787 1624 1339 1306 1328 1392 1417 1451 1443 1518 1513 1485 1457 1564 1526 1492 1515 1563 1522 ]
C [ 1290 1356 1349 1391 1368 1330 1380 1362 1336 1349 1300 1278 1289 1303 1348 1349 1349 1496 1497 466 38 4 2 103 2038 85 68 724 5646 5144 1948 1279 1262 1489 1496 1478 1469 1423 1442 1439 1352 1398 1368 1356 1305 1268 1356 1406 1363 1350 ]
G [ 1457 1396 1438 1536 1387 1504 1329 1428 1441 1497 1518 1660 1625 1442 1491 1483 1386 1461 1008 1321 5575 5755 4672 2826 1016 69 31 125 3 47 602 1576 1515 1587 1297 1460 1357 1406 1388 1300 1274 1394 1375 1454 1384 1377 1411 1357 1297 1292 ]
T [ 1510 1519 1482 1434 1530 1450 1528 1564 1513 1484 1511 1377 1311 1397 1388 1361 1490 1520 1726 1504 128 23 1075 411 782 5471 5675 4830 67 420 1033 1142 1383 1369 1685 1518 1566 1538 1503 1602 1640 1479 1556 1517 1531 1613 1525 1506 1561 1620 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 0.00 -0.03 -0.04 -0.03 0.03 0.03 0.01 -0.02 -0.02 -0.01 -0.02 -0.00 0.00 0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.01 -0.00 -0.03 -0.06 -0.04 0.00 -0.02 -0.01 0.02 0.07 0.06 0.03 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.07 0.09 0.07 0.04 0.01 -0.03 -0.03 -0.04 -0.06 -0.01 0.01 0.01 0.01 0.01 0.01 ]
T [ -0.00 0.00 0.01 -0.00 -0.01 -0.01 0.02 -0.01 -0.00 0.05 0.07 0.04 -0.00 -0.02 -0.02 -0.01 -0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3115

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3026

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2635

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1958

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1699

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 1672

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 719

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 42

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 39

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 27

CWM

PFM

     

HCWM

9 profiles found for the same TF (RELA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000826.1 RELA ENCSR000EAI GM12891 Homo sapiens MA0107.1
BP000827.1 RELA ENCSR000EAN GM12892 Homo sapiens MA0107.1
BP000828.1 RELA ENCSR000EAQ GM15510 Homo sapiens MA0107.1
BP000829.1 RELA ENCSR000EBA GM18526 Homo sapiens MA0107.1
BP000830.1 RELA ENCSR000EBD GM18951 Homo sapiens MA0107.1
BP000831.1 RELA ENCSR000EBI GM19099 Homo sapiens MA0107.1
BP000832.1 RELA ENCSR000EBM GM19193 Homo sapiens MA0107.1
BP000833.1 RELA ENCSR580HOI HepG2 Homo sapiens MA0107.1
BP000834.1 RELA ENCSR664POU GM12878 Homo sapiens MA0107.1
Showing 9 profiles of page 1 from 1 pages
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