Detailed information of deep learning profile BP000652.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA1 in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000652.1
Cell line/tissue: MCF-7
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0148.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR126YEB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.07 -0.00 0.01 -0.00 0.02 0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.05 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 -0.00 0.04 -0.00 0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ 0.00 -0.00 0.00 0.00 0.06 0.00 0.07 0.05 0.05 -0.00 0.00 0.01 0.02 0.00 -0.00 0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 4255 4857 4754 4580 4412 4195 4291 4470 4527 4330 4521 4317 4071 3635 3409 3706 3700 260 5278 59 92 40 15453 194 6381 1307 8662 5681 2975 4436 5419 5124 4221 4505 4632 4543 4524 4641 4660 4394 4608 4943 4489 4621 4353 4365 4442 4371 4364 4438 ]
C [ 2930 2994 2804 3317 2687 2971 3609 3375 3275 3183 2974 3572 2704 2939 4439 2969 2643 70 52 30 20 16 4 13071 2273 3471 389 1768 3595 3410 2645 2926 2733 3140 3118 2695 2798 2871 2856 3289 2959 2686 2917 2822 3016 3141 2826 2794 2812 3212 ]
G [ 3268 2740 3114 2634 2726 2819 2676 2820 2725 3032 3294 2665 2996 3531 3100 2484 2138 71 10200 14 1009 4075 66 46 159 1071 599 4556 4517 3550 3077 2784 3084 2820 2947 2822 3110 3121 3303 2730 2848 2721 2760 3268 3269 2866 3209 3190 3349 2924 ]
T [ 5083 4945 4864 5005 5711 5551 4960 4871 5009 4991 4747 4982 5765 5431 4588 6377 7055 15135 6 15433 14415 11405 13 2225 6723 9687 5886 3531 4449 4140 4395 4702 5498 5071 4839 5476 5104 4903 4717 5123 5121 5186 5370 4825 4898 5164 5059 5181 5011 4962 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 0.01 -0.02 0.05 -0.02 -0.01 -0.03 0.07 -0.00 0.03 -0.01 0.03 0.01 -0.00 0.00 0.00 ]
C [ 0.01 0.02 0.02 0.01 -0.01 -0.02 -0.01 -0.06 -0.06 -0.05 0.06 0.00 0.02 -0.03 0.01 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.03 0.07 -0.04 0.03 0.04 0.04 -0.03 -0.01 -0.01 -0.01 0.02 0.02 0.02 0.01 ]
T [ 0.01 0.00 0.01 0.01 0.06 -0.06 0.07 0.05 0.07 -0.03 0.02 0.02 0.03 0.02 0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 6416

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1526

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1028

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 683

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 394

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 116

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 81

CWM

PFM

     

HCWM

12 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000645.1 FOXA1 ENCSR000BKW Ishikawa Homo sapiens MA0148.5
BP000646.1 FOXA1 ENCSR000BKY T47D Homo sapiens MA0148.5
BP000647.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens MA0148.5
BP000648.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens MA0148.5
BP000649.1 FOXA1 ENCSR000BPX A549 Homo sapiens MA0148.5
BP000650.1 FOXA1 ENCSR000BRD A549 Homo sapiens MA0148.5
BP000651.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens MA0148.5
BP000653.1 FOXA1 ENCSR267DFA HepG2 Homo sapiens MA0148.5
BP000654.1 FOXA1 ENCSR324RCI liver Homo sapiens MA0148.5
BP000655.1 FOXA1 ENCSR735KEY liver Homo sapiens MA0148.5
Showing 10 profiles of page 1 from 2 pages