Detailed information of deep learning profile BP000653.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000653.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0148.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR267DFA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.05 -0.00 0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.04 -0.00 0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.03 -0.00 0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]
T [ 0.00 -0.00 0.00 0.00 0.05 0.00 0.06 0.04 0.03 0.00 0.00 0.00 0.01 0.00 -0.00 ]

Frequency matrix

       
A [ 1533 1535 1537 1570 1580 1499 1525 1542 1641 1622 1570 1618 1625 1482 1261 986 1441 1451 97 1884 5 17 6 5522 73 2264 502 2885 1749 961 1508 1679 1634 1501 1618 1573 1586 1655 1659 1694 1541 1562 1675 1611 1612 1559 1596 1584 1518 1616 ]
C [ 1138 1099 1198 1180 1164 1108 1140 1244 1155 1245 1243 1221 1160 1089 1237 1801 1317 1182 31 13 1 1 2 0 4855 897 1508 138 767 1477 1241 1151 1244 1056 1127 1168 1104 1115 1146 1066 1183 1189 1090 1178 1095 1141 1138 1086 1089 1139 ]
G [ 1145 1208 1115 1105 1081 1145 1105 1071 1083 1047 1079 1069 1068 1268 1256 1184 988 971 12 3651 1 427 1675 26 3 32 521 256 1881 1680 1497 1187 1023 1079 1138 1158 1146 1116 1106 1127 1061 1123 1111 1111 1132 1122 1143 1116 1181 1139 ]
T [ 1732 1706 1698 1693 1723 1796 1778 1691 1669 1634 1656 1640 1695 1709 1794 1577 1802 1944 5408 0 5541 5103 3865 0 617 2355 3017 2269 1151 1430 1302 1531 1647 1912 1665 1649 1712 1662 1637 1661 1763 1674 1672 1648 1709 1726 1671 1762 1760 1654 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 0.00 -0.02 0.04 -0.02 -0.02 -0.04 0.06 -0.02 0.02 -0.01 0.02 0.01 -0.00 0.00 0.00 ]
C [ 0.01 0.02 0.01 0.00 -0.01 -0.03 -0.03 -0.05 -0.05 -0.04 0.05 0.00 0.02 -0.02 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.03 0.06 -0.03 0.02 0.03 0.02 -0.03 -0.02 -0.01 -0.01 0.01 0.01 0.01 0.00 ]
T [ 0.01 -0.00 0.00 0.00 0.05 -0.06 0.06 0.04 0.04 -0.04 0.01 0.01 0.02 0.01 -0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1918

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 685

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 31

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 28

CWM

PFM

     

HCWM

12 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000645.1 FOXA1 ENCSR000BKW Ishikawa Homo sapiens MA0148.5
BP000646.1 FOXA1 ENCSR000BKY T47D Homo sapiens MA0148.5
BP000647.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens MA0148.5
BP000648.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens MA0148.5
BP000649.1 FOXA1 ENCSR000BPX A549 Homo sapiens MA0148.5
BP000650.1 FOXA1 ENCSR000BRD A549 Homo sapiens MA0148.5
BP000651.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens MA0148.5
BP000652.1 FOXA1 ENCSR126YEB MCF-7 Homo sapiens MA0148.5
BP000654.1 FOXA1 ENCSR324RCI liver Homo sapiens MA0148.5
BP000655.1 FOXA1 ENCSR735KEY liver Homo sapiens MA0148.5
Showing 10 profiles of page 1 from 2 pages