Detailed information of deep learning profile BP000645.1

  1. Home
  2. Deep Learning Profile > BP000645.1
This page shows detailed deep learning-derived predictions and motifs for FOXA1 in Ishikawa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000645.1
Cell line/tissue: Ishikawa
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0148.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR000BKW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 -0.00 -0.00 0.04 0.00 0.01 -0.00 0.01 0.00 -0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.03 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.03 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ 0.00 -0.00 0.00 0.00 0.04 -0.00 0.05 0.04 0.04 -0.00 0.00 0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1521 1440 1513 1509 1562 1509 1562 1560 1553 1577 1625 1608 1545 1532 1605 1660 1445 1322 1054 1150 1267 120 1538 42 15 12 4498 169 2266 571 3072 1370 1012 1429 1823 1471 1459 1600 1592 1553 1536 1519 1676 1520 1432 1523 1587 1643 1511 1564 ]
C [ 1411 1456 1464 1452 1360 1474 1463 1491 1328 1380 1492 1541 1543 1512 1437 1452 1369 1407 2099 1645 1458 37 15 22 12 19 11 4907 985 1955 229 979 1730 1646 1470 1490 1465 1344 1368 1401 1390 1569 1454 1497 1591 1499 1556 1441 1504 1425 ]
G [ 1448 1474 1446 1438 1533 1390 1443 1335 1468 1410 1371 1327 1300 1416 1393 1318 1540 1609 1362 1380 1206 42 4525 11 247 893 1552 63 74 667 372 2655 1819 1630 1406 1466 1425 1398 1545 1464 1416 1379 1338 1436 1463 1358 1323 1366 1428 1403 ]
T [ 1699 1709 1656 1680 1624 1706 1611 1693 1730 1712 1591 1603 1691 1619 1644 1649 1725 1741 1564 1904 2148 5880 1 6004 5805 5155 18 940 2754 2886 2406 1075 1518 1374 1380 1652 1730 1737 1574 1661 1737 1612 1611 1626 1593 1699 1613 1629 1636 1687 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 0.00 -0.01 0.04 -0.01 -0.01 -0.04 0.05 -0.01 0.02 -0.01 0.02 0.00 -0.00 0.00 0.00 ]
C [ 0.01 0.01 0.01 0.00 -0.01 -0.03 -0.02 -0.04 -0.03 -0.04 0.03 -0.00 0.02 -0.02 0.00 0.01 0.01 0.00 ]
G [ 0.01 0.01 0.01 0.01 -0.02 0.04 -0.03 0.01 0.01 0.03 -0.03 -0.02 -0.01 -0.01 0.01 0.01 0.01 0.01 ]
T [ 0.00 0.00 0.00 0.01 0.04 -0.04 0.05 0.04 0.05 -0.04 0.01 0.01 0.02 0.01 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 402

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 115

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 34

CWM

PFM

     

HCWM

12 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000646.1 FOXA1 ENCSR000BKY T47D Homo sapiens MA0148.5
BP000647.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens MA0148.5
BP000648.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens MA0148.5
BP000649.1 FOXA1 ENCSR000BPX A549 Homo sapiens MA0148.5
BP000650.1 FOXA1 ENCSR000BRD A549 Homo sapiens MA0148.5
BP000651.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens MA0148.5
BP000652.1 FOXA1 ENCSR126YEB MCF-7 Homo sapiens MA0148.5
BP000653.1 FOXA1 ENCSR267DFA HepG2 Homo sapiens MA0148.5
BP000654.1 FOXA1 ENCSR324RCI liver Homo sapiens MA0148.5
BP000655.1 FOXA1 ENCSR735KEY liver Homo sapiens MA0148.5
Showing 10 profiles of page 1 from 2 pages