Detailed information of deep learning profile BP000650.1

  1. Home
  2. Deep Learning Profile > BP000650.1
This page shows detailed deep learning-derived predictions and motifs for FOXA1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000650.1
Cell line/tissue: A549
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0148.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR000BRD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 0.01 0.01 0.00 -0.00 0.07 0.07 0.09 0.00 0.07 0.00 0.00 -0.00 0.00 ]
C [ 0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.06 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.01 -0.00 0.06 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.00 ]
T [ 0.00 0.02 -0.00 0.01 0.00 0.09 -0.00 -0.00 0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4829 4932 5012 5044 4910 4883 4902 4997 5068 5011 5070 5525 4829 4477 3934 4670 3778 7179 8883 7624 2388 7 13940 16141 17174 0 16673 6375 5252 4594 5351 5160 4850 4908 5160 4947 4911 4896 5288 5327 5048 5067 5126 5007 5172 5071 5240 5015 4988 4901 ]
C [ 3768 3623 3580 3660 3661 3728 3548 3578 3804 3743 3698 3613 3766 3792 4543 4884 6411 879 1603 164 52 36 3248 992 6 12264 63 3035 3684 3680 4003 4078 3520 3584 3504 3607 3472 3575 3667 3626 3524 3696 3604 3928 3605 3752 3744 3861 3580 3657 ]
G [ 3629 3749 3736 3885 3755 3533 3860 3740 3675 3611 3535 3612 3869 3752 4208 4464 2467 628 5062 2241 14440 3 3 7 13 21 124 3653 4599 5700 3990 3558 3970 3767 4050 4045 3945 4138 3693 3622 3797 3778 3774 3626 3801 3817 3669 3745 3770 3980 ]
T [ 4987 4909 4885 4624 4887 5069 4903 4898 4666 4848 4910 4463 4749 5192 4528 3195 4557 8527 1665 7184 333 17167 22 73 20 4928 353 4150 3678 3239 3869 4417 4873 4954 4499 4614 4885 4604 4565 4638 4844 4672 4709 4652 4635 4573 4560 4592 4875 4675 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.00 -0.00 0.02 0.03 0.03 0.02 -0.04 0.09 0.07 0.09 -0.08 0.07 0.02 0.00 0.00 0.00 ]
C [ 0.01 0.02 0.02 0.02 -0.01 -0.01 -0.02 -0.03 0.05 0.04 0.03 -0.05 0.09 -0.03 0.01 0.02 0.02 0.01 ]
G [ 0.01 0.01 0.02 0.01 -0.03 0.03 -0.01 0.07 -0.07 -0.06 -0.06 -0.02 -0.04 -0.01 0.01 0.02 0.02 0.01 ]
T [ 0.00 0.00 -0.01 0.01 0.04 -0.01 0.03 -0.01 0.09 -0.04 -0.01 -0.01 0.06 -0.01 0.01 0.00 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 7107

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 5677

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1252

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1018

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 707

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 133

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 111

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 38

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 36

CWM

PFM

     

HCWM

12 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000645.1 FOXA1 ENCSR000BKW Ishikawa Homo sapiens MA0148.5
BP000646.1 FOXA1 ENCSR000BKY T47D Homo sapiens MA0148.5
BP000647.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens MA0148.5
BP000648.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens MA0148.5
BP000649.1 FOXA1 ENCSR000BPX A549 Homo sapiens MA0148.5
BP000651.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens MA0148.5
BP000652.1 FOXA1 ENCSR126YEB MCF-7 Homo sapiens MA0148.5
BP000653.1 FOXA1 ENCSR267DFA HepG2 Homo sapiens MA0148.5
BP000654.1 FOXA1 ENCSR324RCI liver Homo sapiens MA0148.5
BP000655.1 FOXA1 ENCSR735KEY liver Homo sapiens MA0148.5
Showing 10 profiles of page 1 from 2 pages