Detailed information of deep learning profile BP000647.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000647.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0148.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR000BLE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 0.01 -0.00 -0.00 0.00 0.10 0.00 0.01 -0.00 0.02 0.00 ]
C [ 0.00 0.01 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.07 -0.00 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.07 -0.00 0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.01 ]
T [ 0.00 -0.00 0.00 0.01 0.08 0.00 0.11 0.07 0.07 -0.00 0.00 0.01 0.01 0.01 -0.00 ]

Frequency matrix

       
A [ 4720 4599 4906 5251 4935 4943 4630 4611 4555 4812 4729 4775 5078 4929 4519 3810 3161 3455 4302 430 4187 11 86 34 17904 208 7694 1856 8774 4772 3343 4737 5496 5300 4504 4986 5068 4975 5099 5165 5241 4777 4981 5252 4841 4922 4737 4786 4758 4757 ]
C [ 3816 4101 3754 3974 3950 4312 3683 3900 4678 4425 4307 4055 3789 4372 3722 3960 6450 5020 3935 104 20 9 15 11 0 15592 2875 5072 714 2814 4669 4215 3855 3914 3767 3922 3835 3879 3917 3961 3608 4380 4199 3860 4059 3980 3942 4133 4050 3866 ]
G [ 3827 3890 4233 3659 4066 3633 3758 3717 3720 3617 3683 3891 4234 3546 4259 4576 3750 3645 3143 54 13725 3 1553 3613 20 42 176 1942 1171 6361 4788 4777 3979 3757 4088 3797 3934 3783 3760 3937 4096 3839 3777 3757 3828 4002 3999 3885 3995 4084 ]
T [ 5572 5345 5042 5051 4984 5047 5864 5707 4982 5081 5216 5214 4834 5088 5435 5589 4574 5815 6555 17347 3 17912 16281 14277 11 2093 7190 9065 7276 3988 5135 4206 4605 4964 5576 5230 5098 5298 5159 4872 4990 4939 4978 5066 5207 5031 5257 5131 5132 5228 ]

Hypothetical CWM

   
A [ -0.00 -0.01 -0.00 0.01 -0.01 0.06 -0.03 -0.02 -0.05 0.10 -0.01 0.04 -0.01 0.04 0.01 -0.01 0.00 0.00 ]
C [ 0.01 0.03 0.02 0.01 -0.02 -0.05 -0.03 -0.09 -0.09 -0.07 0.08 0.00 0.03 -0.03 0.01 0.02 0.01 0.01 ]
G [ 0.01 0.02 0.01 0.01 -0.04 0.09 -0.05 0.03 0.05 0.04 -0.05 -0.02 -0.01 -0.01 0.03 0.02 0.02 0.01 ]
T [ 0.01 0.00 0.01 0.02 0.08 -0.08 0.11 0.08 0.09 -0.04 0.02 0.02 0.03 0.02 -0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 6383

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3926

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1561

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1503

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1159

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 1027

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 275

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 166

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 161

CWM

PFM

     

HCWM

12 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000645.1 FOXA1 ENCSR000BKW Ishikawa Homo sapiens MA0148.5
BP000646.1 FOXA1 ENCSR000BKY T47D Homo sapiens MA0148.5
BP000648.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens MA0148.5
BP000649.1 FOXA1 ENCSR000BPX A549 Homo sapiens MA0148.5
BP000650.1 FOXA1 ENCSR000BRD A549 Homo sapiens MA0148.5
BP000651.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens MA0148.5
BP000652.1 FOXA1 ENCSR126YEB MCF-7 Homo sapiens MA0148.5
BP000653.1 FOXA1 ENCSR267DFA HepG2 Homo sapiens MA0148.5
BP000654.1 FOXA1 ENCSR324RCI liver Homo sapiens MA0148.5
BP000655.1 FOXA1 ENCSR735KEY liver Homo sapiens MA0148.5
Showing 10 profiles of page 1 from 2 pages