Detailed information of deep learning profile BP000649.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000649.1
Cell line/tissue: A549
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0148.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR000BPX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.02 0.03 0.00 0.02 0.00 -0.00 0.00 0.00 ]
C [ 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.03 -0.00 -0.00 0.00 0.00 0.00 ]
G [ -0.00 -0.00 0.00 -0.00 0.02 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 ]
T [ 0.00 0.00 -0.00 0.00 -0.00 0.03 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1000 952 958 962 917 890 954 975 959 869 958 950 993 928 859 944 1068 1011 918 825 951 735 1357 1605 1475 535 5 2393 3048 3099 0 2999 1117 949 856 1055 1030 937 953 949 959 894 932 966 970 946 929 931 981 990 ]
C [ 615 655 581 645 646 679 619 615 587 675 625 655 648 587 646 579 589 584 624 807 782 1123 181 425 40 5 5 680 22 0 3100 7 538 664 620 648 649 621 587 570 593 653 623 637 645 590 618 638 615 591 ]
G [ 655 629 640 648 644 614 605 609 684 691 579 631 598 649 650 634 597 675 648 672 814 438 112 770 389 2501 3 14 14 1 0 12 666 829 1082 684 628 681 654 706 730 635 645 605 616 641 682 654 648 655 ]
T [ 832 866 923 847 895 919 924 903 872 867 940 866 863 938 947 945 848 832 912 798 555 806 1452 302 1198 61 3089 15 18 2 2 84 781 660 544 715 795 863 908 877 820 920 902 894 871 925 873 879 858 866 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 0.00 0.01 0.01 0.01 0.01 -0.01 0.03 0.02 0.03 -0.02 0.02 0.01 0.00 0.00 0.00 ]
C [ 0.00 0.01 0.00 0.01 -0.00 -0.00 -0.01 -0.02 0.01 0.01 0.02 -0.01 0.03 -0.02 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.00 -0.01 0.01 -0.00 0.03 -0.02 -0.02 -0.02 -0.01 -0.01 -0.00 0.00 0.01 0.01 0.00 ]
T [ 0.00 0.00 -0.00 0.00 0.01 -0.00 0.01 -0.00 0.03 -0.02 -0.01 -0.01 0.02 -0.00 0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 6255

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1473

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1319

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 802

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 767

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 339

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 238

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 171

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 59

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 57

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 34

CWM

PFM

     

HCWM

12 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000645.1 FOXA1 ENCSR000BKW Ishikawa Homo sapiens MA0148.5
BP000646.1 FOXA1 ENCSR000BKY T47D Homo sapiens MA0148.5
BP000647.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens MA0148.5
BP000648.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens MA0148.5
BP000650.1 FOXA1 ENCSR000BRD A549 Homo sapiens MA0148.5
BP000651.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens MA0148.5
BP000652.1 FOXA1 ENCSR126YEB MCF-7 Homo sapiens MA0148.5
BP000653.1 FOXA1 ENCSR267DFA HepG2 Homo sapiens MA0148.5
BP000654.1 FOXA1 ENCSR324RCI liver Homo sapiens MA0148.5
BP000655.1 FOXA1 ENCSR735KEY liver Homo sapiens MA0148.5
Showing 10 profiles of page 1 from 2 pages