Detailed information of deep learning profile BP000652.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA1 in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000652.1
Cell line/tissue: MCF-7
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0148.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR126YEB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 -0.00 0.00 0.02 0.01 0.00 -0.00 0.05 0.05 0.07 0.00 0.06 0.00 0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.00 -0.00 0.04 -0.00 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.05 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 0.00 0.02 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.00 0.01 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4962 5011 5181 5059 5164 4898 4825 5370 5186 5121 5123 4717 4903 5104 5476 4839 5071 5498 4702 4395 4140 4449 3531 5886 9687 6723 2225 13 11405 14415 15433 6 15135 7055 6377 4588 5431 5765 4982 4747 4991 5009 4871 4960 5551 5711 5005 4864 4945 5083 ]
C [ 2924 3349 3190 3209 2866 3269 3268 2760 2721 2848 2730 3303 3121 3110 2822 2947 2820 3084 2784 3077 3550 4517 4556 599 1071 159 46 66 4075 1009 14 10200 71 2138 2484 3100 3531 2996 2665 3294 3032 2725 2820 2676 2819 2726 2634 3114 2740 3268 ]
G [ 3212 2812 2794 2826 3141 3016 2822 2917 2686 2959 3289 2856 2871 2798 2695 3118 3140 2733 2926 2645 3410 3595 1768 389 3471 2273 13071 4 16 20 30 52 70 2643 2969 4439 2939 2704 3572 2974 3183 3275 3375 3609 2971 2687 3317 2804 2994 2930 ]
T [ 4438 4364 4371 4442 4365 4353 4621 4489 4943 4608 4394 4660 4641 4524 4543 4632 4505 4221 5124 5419 4436 2975 5681 8662 1307 6381 194 15453 40 92 59 5278 260 3700 3706 3409 3635 4071 4317 4521 4330 4527 4470 4291 4195 4412 4580 4754 4857 4255 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 0.00 0.02 0.03 0.02 0.02 -0.03 0.07 0.05 0.07 -0.06 0.06 0.01 0.01 0.00 0.01 ]
C [ 0.01 0.02 0.02 0.02 -0.01 -0.01 -0.01 -0.03 0.04 0.04 0.03 -0.04 0.07 -0.03 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.01 -0.03 0.02 0.00 0.06 -0.05 -0.06 -0.06 -0.01 -0.02 -0.01 0.01 0.02 0.02 0.01 ]
T [ 0.00 0.00 -0.00 0.01 0.03 -0.01 0.03 -0.00 0.07 -0.03 -0.01 -0.02 0.05 -0.02 0.01 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 6416

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1526

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1028

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 683

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 394

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 116

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 81

CWM

PFM

     

HCWM

12 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000645.1 FOXA1 ENCSR000BKW Ishikawa Homo sapiens MA0148.5
BP000646.1 FOXA1 ENCSR000BKY T47D Homo sapiens MA0148.5
BP000647.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens MA0148.5
BP000648.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens MA0148.5
BP000649.1 FOXA1 ENCSR000BPX A549 Homo sapiens MA0148.5
BP000650.1 FOXA1 ENCSR000BRD A549 Homo sapiens MA0148.5
BP000651.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens MA0148.5
BP000653.1 FOXA1 ENCSR267DFA HepG2 Homo sapiens MA0148.5
BP000654.1 FOXA1 ENCSR324RCI liver Homo sapiens MA0148.5
BP000655.1 FOXA1 ENCSR735KEY liver Homo sapiens MA0148.5
Showing 10 profiles of page 1 from 2 pages