Detailed information of deep learning profile BP000025.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000025.1
Cell line/tissue: H1
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000BNH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.01 0.00 0.01 0.04 0.00 0.07 0.11 0.04 0.05 0.12 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 0.00 0.06 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 0.00 0.12 0.06 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.04 -0.00 -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5122 4932 5020 5486 5364 5193 5237 5243 4742 5650 5293 4475 4618 4210 6279 7230 3216 8480 2973 1749 2335 2054 488 6541 357 219 1851 7831 990 4528 296 1572 4244 5109 7284 5585 6440 5510 5166 5150 5494 5355 6259 8317 6517 4674 5038 4805 5992 6026 ]
C [ 5641 5885 5649 5168 5217 5629 5611 5727 5413 4262 4087 5563 5673 8130 4858 5694 6192 2732 5599 10105 1643 16434 20203 12023 14002 20843 2642 2106 7853 2386 416 1750 8636 6516 3611 5168 4508 4991 5040 4718 4062 3657 4796 4883 5024 4934 4216 7118 7138 5486 ]
G [ 5383 5373 5198 5273 5154 4992 5210 5592 5066 6219 7392 6541 5753 4477 4506 4632 5085 6727 10344 2340 13237 2029 303 661 156 59 537 7898 10817 1599 19960 15963 2627 4862 7038 5835 5150 5736 5890 6400 7403 8432 5299 4037 4568 4780 6386 5425 3872 4967 ]
T [ 5375 5331 5654 5594 5786 5707 5463 4959 6300 5390 4749 4942 5477 4704 5878 3965 7028 3582 2605 7327 4306 1004 527 2296 7006 400 16491 3686 1861 13008 849 2236 6014 5034 3588 4933 5423 5284 5425 5253 4562 4077 5167 4284 5412 7133 5881 4173 4519 5042 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.01 -0.03 0.02 -0.01 -0.04 -0.02 0.00 -0.02 0.01 -0.04 -0.03 -0.02 0.03 -0.04 -0.02 -0.05 -0.03 -0.02 -0.01 0.01 0.00 0.00 -0.00 -0.00 ]
C [ 0.02 0.03 0.01 0.02 0.02 0.00 0.04 0.09 -0.00 0.09 0.12 0.08 0.09 0.12 0.02 -0.00 0.04 0.04 -0.02 -0.01 0.04 0.03 0.00 0.01 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.02 0.03 0.05 -0.00 0.09 -0.01 -0.02 0.00 -0.03 -0.01 0.00 0.04 0.08 0.00 0.13 0.08 -0.00 0.03 0.04 0.02 0.01 0.01 0.02 ]
T [ -0.00 -0.01 0.00 -0.02 0.01 -0.02 -0.02 0.01 -0.01 -0.04 -0.04 -0.04 0.02 -0.03 0.05 -0.01 -0.02 0.02 -0.02 -0.01 0.01 -0.01 -0.02 -0.01 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 707

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 243

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 191

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 187

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 62

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000062.1 CTCF ENCSR000DPY fibroblast of the aortic adventitia Homo sapiens MA0139.2
BP000063.1 CTCF ENCSR000DQD BE2C Homo sapiens MA0139.2
BP000064.1 CTCF ENCSR000DQI BJ Homo sapiens MA0139.2
BP000065.1 CTCF ENCSR000DQN Caco-2 Homo sapiens MA0139.2
BP000066.1 CTCF ENCSR000DQW GM06990 Homo sapiens MA0139.2
BP000067.1 CTCF ENCSR000DQY GM12801 Homo sapiens MA0139.2
BP000068.1 CTCF ENCSR000DRB GM12864 Homo sapiens MA0139.2
BP000069.1 CTCF ENCSR000DRE GM12865 Homo sapiens MA0139.2
BP000070.1 CTCF ENCSR000DRN GM12872 Homo sapiens MA0139.2
BP000071.1 CTCF ENCSR000DRP GM12873 Homo sapiens MA0139.2
Showing 10 profiles of page 7 from 45 pages