Detailed information of deep learning profile BP000067.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM12801 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000067.1
Cell line/tissue: GM12801
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DQY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.04 -0.00 -0.01 0.10 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.02 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.11 0.19 -0.00 0.07 0.01 -0.00 0.00 -0.00 0.00 -0.00 -0.00 0.11 -0.00 0.04 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.03 -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.16 0.06 0.05 0.19 0.11 -0.00 0.07 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 901 657 599 1249 1756 1114 747 961 656 833 1116 1072 1175 1209 1092 499 880 1340 386 55 3459 184 616 4171 61 1839 203 52 221 547 1914 457 631 1810 814 1524 956 1143 1033 946 1208 1618 815 1158 1126 1354 1156 1078 1149 1147 ]
C [ 1214 797 1374 1786 996 869 637 1177 2388 1926 1674 1675 1371 1131 1172 1550 919 422 3873 4600 179 3023 1991 124 27 49 203 19 205 3627 145 2460 1642 1145 927 941 790 1420 1724 2142 1753 896 1542 1210 1182 1164 1191 1223 1206 1294 ]
G [ 1230 1903 1911 772 1267 1187 1080 1148 622 796 1039 1075 1035 964 1215 603 1854 2278 214 27 629 1393 303 253 4598 2753 2583 4615 3952 138 2504 1485 513 1356 1456 1006 2174 1307 1129 575 633 1352 1310 1271 1297 1101 1166 1490 1397 1293 ]
T [ 1371 1359 832 909 697 1546 2252 1430 1050 1161 887 894 1135 1412 1237 2064 1063 676 243 34 449 116 1806 168 30 75 1727 30 338 404 153 314 1930 405 1519 1245 796 846 830 1053 1122 850 1049 1077 1111 1097 1203 925 964 982 ]

Hypothetical CWM

   
A [ -0.01 0.00 -0.00 0.01 -0.05 -0.03 0.03 -0.02 -0.07 0.05 -0.05 -0.03 0.11 -0.05 0.04 -0.09 -0.06 -0.04 -0.03 0.04 -0.02 -0.02 0.04 -0.02 0.02 -0.00 0.01 ]
C [ 0.03 0.02 0.02 0.02 0.06 0.03 -0.04 0.13 0.20 -0.04 0.12 0.04 -0.01 -0.02 -0.05 0.02 -0.05 -0.04 0.15 -0.07 0.07 0.03 0.02 0.01 0.00 -0.00 0.02 ]
G [ 0.00 0.01 0.00 0.02 -0.00 0.03 0.08 -0.04 -0.02 0.08 0.04 -0.03 0.01 0.16 0.12 0.09 0.19 0.13 -0.06 0.14 0.02 -0.02 0.02 0.01 -0.01 0.04 0.01 ]
T [ 0.00 -0.00 0.02 0.00 0.04 -0.00 -0.02 -0.03 -0.08 -0.06 -0.06 0.06 -0.07 -0.06 -0.07 0.02 -0.07 -0.02 -0.02 -0.09 -0.03 0.04 -0.05 0.03 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 47

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages