Detailed information of deep learning profile BP000065.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in Caco-2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000065.1
Cell line/tissue: Caco-2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DQN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.00 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 0.00 0.10 0.16 0.06 0.08 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 0.00 0.17 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 5433 5211 5318 5828 5709 5508 5514 5517 5024 5781 5584 4732 4852 4321 6548 7571 3440 8890 3278 1963 2433 2182 577 6950 337 241 1774 8191 861 4290 344 1593 4393 5547 7979 5962 6719 5952 5453 5313 5829 5648 6659 8973 6849 4879 5323 5189 6443 6432 ]
C [ 6114 6341 6174 5649 5754 6176 6251 6465 6129 4766 4426 6177 6222 8998 5508 6292 6922 3148 6187 10708 1657 17786 21680 13242 15444 22501 2695 2254 8511 3370 500 1941 9543 7335 3758 5706 4978 5395 5513 5200 4543 4118 5548 5421 5619 5423 4681 7556 7511 5935 ]
G [ 5894 5870 5741 5703 5623 5393 5636 6056 5301 6773 8043 7039 6125 4851 4808 4968 5460 7347 10900 2661 14590 2087 355 922 233 123 623 9111 11958 1705 21243 17209 2973 5245 7800 6401 5684 6272 6427 7164 7921 9017 5760 4319 4944 5247 7065 5983 4475 5612 ]
T [ 5777 5796 5985 6038 6132 6141 5817 5180 6764 5898 5165 5270 6019 5048 6354 4387 7396 3833 2853 7886 4538 1163 606 2104 7204 353 18126 3662 1888 13853 1131 2475 6309 5091 3681 5149 5837 5599 5825 5541 4925 4435 5251 4505 5806 7669 6149 4490 4789 5239 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.02 -0.03 0.02 -0.01 -0.05 -0.03 0.00 -0.04 0.02 -0.06 -0.04 -0.02 0.06 -0.05 -0.02 -0.09 -0.05 -0.02 -0.01 0.02 0.00 0.01 -0.00 -0.00 ]
C [ 0.02 0.04 0.01 0.02 0.03 -0.00 0.04 0.11 -0.01 0.12 0.17 0.11 0.13 0.18 0.03 -0.01 0.05 0.07 -0.02 -0.02 0.06 0.04 0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.04 0.07 -0.01 0.11 -0.02 -0.03 -0.00 -0.06 -0.02 -0.00 0.06 0.12 -0.01 0.18 0.12 -0.01 0.04 0.05 0.03 0.02 0.02 0.03 ]
T [ 0.00 -0.01 0.01 -0.02 0.02 -0.02 -0.02 0.02 -0.01 -0.05 -0.06 -0.06 0.04 -0.05 0.09 -0.01 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.02 -0.01 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 187

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages