Detailed information of deep learning profile BP000071.1

  1. Home
  2. Deep Learning Profile > BP000071.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in GM12873 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000071.1
Cell line/tissue: GM12873
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DRP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 0.00 0.09 0.15 0.06 0.08 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.18 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4758 4578 4723 5120 5066 4918 4835 4880 4462 5100 4933 4266 4432 4010 5671 6540 3256 7576 3244 1931 2506 2079 777 5652 476 319 1747 7688 802 4044 307 1232 3742 4586 7046 5039 5978 5072 4701 4707 5140 4710 5829 8029 6094 4241 4667 4497 5555 5807 ]
C [ 5392 5398 5432 4982 5130 5266 5460 5495 5462 4422 4181 5332 5392 7473 4929 5426 5944 3028 5228 8828 1961 14280 18359 11717 13765 19475 2745 1936 6982 2821 405 1492 8302 6329 3213 5121 4360 4751 4904 4593 3775 3416 4753 4563 4861 4864 3934 6792 6848 5153 ]
G [ 5151 5198 5096 5031 5051 4784 5059 5292 4750 5810 6647 5984 5302 4384 4345 4372 4936 6013 9107 2955 11833 2442 531 935 238 149 578 7337 10905 1447 18674 15573 2537 4933 6816 5689 4937 5576 5727 6177 7182 8476 4983 3806 4336 4558 6315 5213 3786 4833 ]
T [ 4983 5110 5033 5151 5037 5316 4930 4617 5610 4952 4523 4702 5158 4417 5339 3946 6148 3667 2705 6570 3984 1483 617 1980 5805 341 15214 3323 1595 11972 898 1987 5703 4436 3209 4435 5009 4885 4952 4807 4187 3682 4719 3886 4993 6621 5368 3782 4095 4491 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.03 -0.00 -0.04 0.01 -0.07 -0.04 -0.03 0.06 -0.06 -0.02 -0.08 -0.04 -0.02 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.02 0.04 0.01 0.02 0.03 -0.00 0.04 0.11 -0.01 0.11 0.16 0.11 0.13 0.18 0.03 -0.01 0.05 0.07 -0.03 -0.03 0.06 0.04 0.00 0.02 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.06 -0.01 0.11 -0.02 -0.04 -0.00 -0.06 -0.02 -0.01 0.05 0.12 -0.02 0.19 0.13 -0.01 0.05 0.06 0.02 0.01 0.02 0.03 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.02 0.02 -0.01 -0.05 -0.06 -0.06 0.04 -0.06 0.09 -0.02 -0.02 0.04 -0.04 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 613

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 556

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages