Detailed information of deep learning profile BP000068.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM12864 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000068.1
Cell line/tissue: GM12864
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DRB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 0.00 0.10 0.17 0.06 0.08 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 0.00 0.18 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.08 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4727 4480 4560 5054 4920 4839 4781 4853 4369 4884 4821 4093 4288 3818 5548 6484 3066 7703 2889 1788 2300 1960 594 5725 444 231 1652 7474 832 3695 324 1319 3691 4579 6847 5121 5780 5026 4682 4722 4979 4718 5818 7813 6026 4168 4529 4484 5464 5723 ]
C [ 5209 5198 5304 4889 4907 5174 5288 5299 5207 4174 3935 5308 5312 7506 4683 5294 5738 2761 5347 8879 1675 14614 18359 11456 13298 19128 2426 1986 6900 2942 400 1636 8082 6117 3314 4911 4275 4636 4822 4395 3668 3405 4591 4479 4675 4745 3897 6488 6682 4974 ]
G [ 4874 5092 4957 4747 4899 4718 4891 5188 4561 5817 6671 5842 5164 4138 4223 4278 4735 5991 9136 2423 12297 2034 381 870 234 123 631 7177 10442 1548 18245 14872 2508 4747 6516 5384 4807 5331 5498 5909 7080 7996 4862 3705 4141 4405 6062 5078 3696 4634 ]
T [ 5013 5053 5002 5133 5097 5092 4863 4483 5686 4948 4396 4580 5059 4361 5369 3767 6284 3368 2451 6733 3551 1215 489 1772 5847 341 15114 3186 1649 11638 854 1996 5542 4380 3146 4407 4961 4830 4821 4797 4096 3704 4552 3826 4981 6505 5335 3773 3981 4492 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 0.01 -0.04 0.02 -0.06 -0.04 -0.03 0.06 -0.06 -0.02 -0.09 -0.05 -0.02 -0.01 0.02 0.01 0.01 0.00 ]
C [ 0.02 0.04 0.01 0.03 0.03 -0.00 0.04 0.12 -0.01 0.12 0.17 0.11 0.13 0.19 0.03 -0.01 0.05 0.07 -0.02 -0.03 0.06 0.04 0.00 0.02 0.01 0.01 ]
G [ 0.02 0.01 0.02 0.02 0.03 0.04 0.06 -0.01 0.12 -0.02 -0.03 0.00 -0.05 -0.02 -0.01 0.05 0.12 -0.01 0.19 0.13 -0.01 0.04 0.05 0.02 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.01 0.03 -0.01 -0.02 0.02 -0.02 -0.05 -0.06 -0.07 0.03 -0.06 0.09 -0.02 -0.03 0.04 -0.04 -0.01 0.02 -0.02 -0.02 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 946

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages