Detailed information of deep learning profile BP000070.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM12872 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000070.1
Cell line/tissue: GM12872
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DRN
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 -0.00 0.01 0.04 0.00 0.09 0.15 0.06 0.08 0.16 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.03 0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 0.00 0.17 0.09 -0.00 0.01 0.01 0.00 ]
T [ 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5137 4900 4940 5473 5358 5087 5177 5281 4772 5324 5292 4480 4634 4162 6046 6922 3381 8073 3246 2026 2630 2212 792 6096 533 321 1812 8095 869 4193 335 1378 3996 4938 7459 5424 6241 5401 5085 5107 5420 4995 6255 8530 6563 4447 5003 4780 6095 6070 ]
C [ 5751 5755 5822 5440 5412 5729 5800 5781 5711 4623 4320 5819 5774 8124 5133 5780 6304 3126 5619 9611 1935 15506 19580 12327 14477 20638 2991 2150 7513 3142 444 1774 8933 6852 3527 5402 4724 5067 5252 4781 3976 3719 5011 4928 5261 5148 4182 7290 7169 5491 ]
G [ 5435 5556 5423 5236 5342 5138 5419 5702 5075 6333 7204 6368 5698 4607 4689 4715 5267 6554 9982 2891 13005 2472 562 1086 319 203 743 7743 11434 1652 19915 16305 2808 5105 7182 5936 5232 5873 6017 6524 7772 8936 5322 4023 4450 4756 6813 5529 4013 5207 ]
T [ 5273 5385 5411 5447 5484 5642 5200 4832 6038 5316 4780 4929 5490 4703 5728 4179 6644 3843 2749 7068 4026 1406 662 2087 6267 434 16050 3608 1780 12609 902 2139 5859 4701 3428 4834 5399 5255 5242 5184 4428 3946 5008 4115 5322 7245 5598 3997 4319 4828 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.04 -0.02 0.00 -0.03 0.02 -0.06 -0.03 -0.01 0.06 -0.05 -0.02 -0.08 -0.04 -0.02 -0.01 0.02 0.00 0.01 0.00 ]
C [ 0.01 0.03 0.01 0.02 0.02 -0.00 0.03 0.10 -0.01 0.11 0.15 0.10 0.12 0.17 0.03 -0.01 0.05 0.06 -0.02 -0.02 0.05 0.04 0.00 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.03 0.04 0.06 -0.00 0.10 -0.02 -0.03 -0.00 -0.05 -0.02 -0.01 0.05 0.11 -0.00 0.18 0.12 -0.01 0.04 0.05 0.02 0.01 0.01 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.01 0.01 -0.01 -0.04 -0.05 -0.05 0.03 -0.05 0.08 -0.01 -0.02 0.04 -0.03 -0.01 0.02 -0.01 -0.02 0.00 0.00 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages