Detailed information of deep learning profile BP000025.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000025.1
Cell line/tissue: H1
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000BNH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.04 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.06 0.12 0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.06 0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.12 0.05 0.04 0.11 0.07 0.00 0.04 0.01 0.00 0.01 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.00 ]

Frequency matrix

       
A [ 5042 4519 4173 5881 7133 5412 4284 5167 4077 4562 5253 5425 5284 5423 4933 3588 5034 6014 2236 849 13008 1861 3686 16491 400 7006 2296 527 1004 4306 7327 2605 3582 7028 3965 5878 4704 5477 4942 4749 5390 6300 4959 5463 5707 5786 5594 5654 5331 5375 ]
C [ 4967 3872 5425 6386 4780 4568 4037 5299 8432 7403 6400 5890 5736 5150 5835 7038 4862 2627 15963 19960 1599 10817 7898 537 59 156 661 303 2029 13237 2340 10344 6727 5085 4632 4506 4477 5753 6541 7392 6219 5066 5592 5210 4992 5154 5273 5198 5373 5383 ]
G [ 5486 7138 7118 4216 4934 5024 4883 4796 3657 4062 4718 5040 4991 4508 5168 3611 6516 8636 1750 416 2386 7853 2106 2642 20843 14002 12023 20203 16434 1643 10105 5599 2732 6192 5694 4858 8130 5673 5563 4087 4262 5413 5727 5611 5629 5217 5168 5649 5885 5641 ]
T [ 6026 5992 4805 5038 4674 6517 8317 6259 5355 5494 5150 5166 5510 6440 5585 7284 5109 4244 1572 296 4528 990 7831 1851 219 357 6541 488 2054 2335 1749 2973 8480 3216 7230 6279 4210 4618 4475 5293 5650 4742 5243 5237 5193 5364 5486 5020 4932 5122 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.01 -0.02 -0.01 0.01 -0.01 -0.02 0.02 -0.02 -0.01 0.05 -0.03 0.02 -0.04 -0.04 -0.04 -0.01 0.01 -0.02 -0.02 0.01 -0.02 0.00 -0.01 -0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.03 -0.00 0.08 0.13 0.00 0.08 0.04 0.00 -0.01 -0.03 0.00 -0.02 -0.01 0.09 -0.00 0.05 0.03 0.02 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.01 0.00 0.03 0.04 -0.01 -0.02 0.04 0.04 -0.00 0.02 0.12 0.09 0.08 0.12 0.09 -0.00 0.09 0.04 0.00 0.02 0.02 0.01 0.03 0.02 ]
T [ -0.00 -0.00 0.00 0.00 0.01 -0.01 -0.02 -0.03 -0.05 -0.02 -0.04 0.03 -0.02 -0.03 -0.04 0.01 -0.02 0.00 -0.02 -0.04 -0.01 0.02 -0.03 0.01 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 707

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 243

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 191

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 187

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 62

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages